[Home] | [Total List]

[193146_at] Ribosomal protein S3a (human) homolog.

Description F56F3.5 /REP_DB=WormBase Gene ID /WP=CE00664 /TR=SW:P48154 /GB=CAA83605.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ribosomal protein S3a (human) homolog.
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 51      4grp_total > 17      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18951
1 2 3 4 range
A 29591.4
(-3)
P 		37284.2
(-0.5)
P 		37053.4
(-0.6)
P 		48126.1
(3)
P 		18535
B 29876
(-3)
P 		35529.9
(0.1)
P 		36900.3
(0.9)
P 		40690
(3)
P 		10814
C 29879.3
(-2.8)
P 		32978.8
(-1.7)
P 		29175.4
(-3)
P 		46321.1
(3)
P 		17146
avr 29782.2
(-3) 		35264.3
(-0.8) 		34376.4
(-1.2) 		45045.7
(3) 		15264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12506
1 2 3 4 5 6 range
A 30804.4
(1.1)
P 		27682.9
(-0.7)
P 		34275
(3)
P 		28215.6
(-0.4)
P 		23516.9
(-3)
P 		28791.6
(-0.1)
P 		10758
B 27258.8
(0.4)
P 		26415
(-0.1)
P 		31481.2
(3)
P 		27927.6
(0.8)
P 		21768.6
(-3)
P 		22855
(-2.3)
P 		9713
C 24200.7
(-3)
P 		27946.9
(0.4)
P 		30557.6
(2.8)
P 		30761.9
(3)
P 		24853.4
(-2.4)
P 		25922
(-1.4)
P 		6561
avr 27421.3
(-0.2) 		27348.3
(-0.3) 		32104.6
(3) 		28968.4
(0.8) 		23379.6
(-3) 		25856.2
(-1.3) 		8725
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3730
1 2 3 4 range
A 10774.3
(3)
P 		8093.4
(-1.3)
P 		9686.5
(1.3)
P 		7044.7
(-3)
P 		3730
B 9527.2
(3)
P 		8775.1
(-1.6)
P 		8550.7
(-3)
P 		8671.1
(-2.3)
P 		977
C 9890.9
(2.3)
P 		9481.6
(1.3)
P 		10168.5
(3)
P 		7810.5
(-3)
P 		2358
avr 10064.1
(3) 		8783.4
(-0.5) 		9468.6
(1.4) 		7842.1
(-3) 		2222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4167
1 2 3 4 5 6 range
A 5678.6
(-3)
P 		9845.4
(3)
P 		7464.4
(-0.4)
P 		7156.1
(-0.9)
P 		7096.4
(-1)
P 		7009.8
(-1.1)
P 		4167
B 9484.7
(3)
P 		8792.4
(1)
P 		7644.6
(-2.3)
P 		7397
(-3)
P 		8844.3
(1.2)
P 		8522.5
(0.2)
P 		2088
C 8970.2
(3)
P 		8527.4
(2)
P 		7777.4
(0.4)
P 		6186.2
(-3)
P 		8042.2
(1)
P 		8677.6
(2.4)
P 		2784
avr 8044.5
(0.2) 		9055.1
(3) 		7628.8
(-1) 		6913.1
(-3) 		7994.3
(0) 		8070
(0.2) 		2142
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193146_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7331
Sequence Type Exemplar sequence
Representative Public ID F56F3.5 NCBI
Target Description F56F3.5 /REP_DB=WormBase Gene ID /WP=CE00664 /TR=SW:P48154 /GB=CAA83605.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ribosomal protein S3a (human) homolog.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065509(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065509 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-1) (rps-1) mRNA, complete cds. 11/11 None
SNAP00000037232 ENSEMBL cdna:SNAP chromosome:CEL140:III:4475913:4476780:1 11/11 None
GENEFINDER00000037237 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4475913:4476780:1 11/11 None
F56F3.5.2 ENSEMBL cdna:known chromosome:CEL140:III:4475882:4476849:1 gene:F56F3.5 11/11 None
F56F3.5.4 ENSEMBL cdna:known chromosome:CEL140:III:4475882:4476849:1 gene:F56F3.5 11/11 None
F56F3.5.3 ENSEMBL cdna:known chromosome:CEL140:III:4475884:4477091:1 gene:F56F3.5 11/11 None
F56F3.5.1 ENSEMBL cdna:known chromosome:CEL140:III:4475884:4476849:1 gene:F56F3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4475912-4476780(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ribosomal protein S3a (human) homolog.
Gene Symbol rps-1
Ensembl F56F3.5
Entrez Gene 175584 Entrez gene
SwissProt P48154 EMBL-EBI
WormBase CE00664 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:253248_AT 40S ribosomal protein S3A (RPS3aB) at
ATGENOME1:16923_S_AT 40S ribosomal protein S3A (RPS3aB) at
ATGENOME1:16922_I_AT 40S ribosomal protein S3A (RPS3aB) at
CANINE:1605414_AT Ribosomal protein S3A cfa
CANINE:1591147_S_AT Ribosomal protein S3A cfa
CANINE_2:CFA.3544.1.S2_AT Ribosomal protein S3A cfa
CANINE_2:CFAAFFX.11621.1.S1_S_AT Ribosomal protein S3A cfa
CANINE_2:CFAAFFX.16792.1.S1_AT Ribosomal protein S3A cfa
CANINE_2:CFAAFFX.30130.1.S1_X_AT Ribosomal protein S3A cfa
CANINE_2:CFAAFFX.418.1.S1_AT Ribosomal protein S3A cfa
CANINE_2:CFAAFFX.420.1.S1_X_AT Ribosomal protein S3A cfa
CANINE:1592744_AT Ribosomal protein S3A cfa
CANINE:1595873_AT Ribosomal protein S3A cfa
CANINE:1595874_S_AT Ribosomal protein S3A cfa
DROSOPHILA_2:1638439_A_AT Ribosomal protein S3A dm
DROSGENOME1:143892_AT Ribosomal protein S3A dm
CHICKEN:GGA.4651.1.S1_A_AT ribosomal protein S3A gga
HG-FOCUS:201257_X_AT ribosomal protein S3A hs
HG-U133_PLUS_2:201257_X_AT ribosomal protein S3A hs
HG-U133A:201257_X_AT ribosomal protein S3A hs
HG-U133A_2:201257_X_AT ribosomal protein S3A hs
HG-U95AV2:1653_AT ribosomal protein S3A hs
HC-G110:1653_AT ribosomal protein S3A hs
PLASMODIUM_ANOPHELES:200099_S_AT ribosomal protein S3A hs
HG-U133_PLUS_2:200099_S_AT ribosomal protein S3A hs
HG-U133A_2:200099_S_AT ribosomal protein S3A hs
HG-FOCUS:200099_S_AT ribosomal protein S3A hs
HG-U133B:200099_S_AT ribosomal protein S3A hs
HG-U133A:200099_S_AT ribosomal protein S3A hs
U133_X3P:200099_S_AT ribosomal protein S3A hs
HU35KSUBD:RC_D51290_F_AT ribosomal protein S3A hs
HUGENEFL:M84711_AT ribosomal protein S3A hs
U133_X3P:G4506722_3P_X_AT ribosomal protein S3A hs
U133_X3P:HS.77039.1.S1_3P_X_AT ribosomal protein S3A hs
U133_X3P:HS.307132.0.S1_3P_AT ribosomal protein S3A hs
HG-U133A_2:212391_X_AT ribosomal protein S3A hs
HG-U133_PLUS_2:212391_X_AT ribosomal protein S3A hs
HG-U133A:212391_X_AT ribosomal protein S3A hs
HG-U133A_2:216823_AT ribosomal protein S3A hs
HG-U133_PLUS_2:216823_AT ribosomal protein S3A hs
HG-U133A:216823_AT ribosomal protein S3A hs
HG-U95C:51057_AT Ribosomal protein S3A hs
HU35KSUBC:RC_T65957_F_AT Ribosomal protein S3A hs
MU11KSUBB:Z83368_F_AT ribosomal protein S3a mm
MG-U74AV2:101664_AT ribosomal protein S3a mm
MOE430A:1422475_A_AT ribosomal protein S3a mm
MOUSE430A_2:1422475_A_AT ribosomal protein S3a mm
MOUSE430_2:1422475_A_AT ribosomal protein S3a mm
MU19KSUBC:TC35961_AT Ribosomal protein S3a (Rps3a), mRNA mm
MU19KSUBC:TC39192_AT Ribosomal protein S3a (Rps3a), mRNA mm
MU19KSUBC:TC39193_F_AT Ribosomal protein S3a (Rps3a), mRNA mm
MU19KSUBC:TC39194_F_AT Ribosomal protein S3a (Rps3a), mRNA mm
RG-U34A:M84716_AT ribosomal protein S3a rn
RAE230A:1367606_AT ribosomal protein S3a rn
RAT230_2:1367606_AT ribosomal protein S3a rn
YEAST_2:1778592_AT Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Bp and has similarity to rat S3a ribosomal protein Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA83605 Hypothetical protein F56F3.5 [Caenorhabditis elegans] ref|NP_497910.1| Ribosomal Protein, Small subunit family member (rps-1) [Caenorhabditis elegans] sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a 1.0E-126
blast CAE71197 Hypothetical protein CBG18056 [Caenorhabditis briggsae] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR001593 EMBL-EBI Ribosomal protein S3Ae 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193146_AT
agggacgtgtcttcgaggtttcactcggagacttgaacaactctgaggccgacttcagaa
agttcaagctcatcgctgaagatgtccagggaaagaacgttctcaccaacttccacgcta
tgtcgatgacccacgataagttgtgctccatcgtcaagaagtggcatactctcatcgagg
ccaacaccgccgtcaagaccactgatggatacactctccgtgtcttcgttatcgccttca
ccaagaagtccgtcaaccaagtcaagaagacttcctacaccaagacatccaagatccgca
agatccgttccgagatgatcggatgcatcgaaaaggaggtcaccggatgcgaccttaagg
aggttgtcagcaagctcatcccagattccatcggaaaagatattgagaagacctgctcca
agctctacccactccaagaagtctacatccgtaaggtcaagatcatcaagagaccaaagg
ttgatcttggacgtcttcacgacttgcacggagactccatcaccgttggagccgacggtg
agaaggttgatcgcccagacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGGACGTGTCTTCGAGGTTTCACT 88 55 194 Antisense
CAACTTCCACGCTATGTCGATGACC 705 187 300 Antisense
GACCCACGATAAGTTGTGCTCCATC 595 381 321 Antisense
GAAGTGGCATACTCTCATCGAGGCC 558 335 351 Antisense
GACCACTGATGGATACACTCTCCGT 538 383 390 Antisense
AGGAGGTTGTCAGCAAGCTCATCCC 171 57 551 Antisense
GCTCATCCCAGATTCCATCGGAAAA 343 301 567 Antisense
TTGAGAAGACCTGCTCCAAGCTCTA 630 705 596 Antisense
TGATCTTGGACGTCTTCACGACTTG 70 565 675 Antisense
ACTTGCACGGAGACTCCATCACCGT 218 105 695 Antisense
GTGAGAAGGTTGATCGCCCAGACGA 624 459 731 Antisense
Sequence Source Affymetrix Proprietary Database