[Home] | [Total List]

[193143_at] 7TM chemoreceptor (srd-family)

Description C06G8.4 /REP_DB=WormBase Gene ID /WP=CE05232 /GEN=srd-7 /TR=Q17760 /GB=CAA94325.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM chemoreceptor (srd-family)
Cluster 6grp_total > 93      4grp_total > 33      6grp_cgc > 98      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 21.9
(-3)
A 		34.8
(-0.4)
A 		51.2
(3)
A 		29.2
(-1.5)
A 		29
B 33.3
(-1.3)
A 		46.9
(3)
P 		27.7
(-3)
A 		38.8
(0.5)
P 		19
C 28.2
(-3)
A 		31.8
(-1.8)
A 		30.2
(-2.3)
P 		46.5
(3)
P 		18
avr 27.8
(-3) 		37.8
(2.8) 		36.4
(2) 		38.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 32
(1)
A 		14.1
(-1.8)
A 		12.8
(-2)
A 		6.4
(-3)
A 		44.5
(3)
A 		9
(-2.6)
A 		38
B 25.7
(-1.3)
P 		14
(-3)
A 		47.4
(1.9)
P 		54.5
(3)
P 		21.4
(-1.9)
A 		23.1
(-1.7)
A 		41
C 15.2
(-0.9)
A 		18.1
(-0)
A 		16.2
(-0.6)
A 		7.6
(-3)
A 		28.9
(3)
A 		22.9
(1.3)
P 		21
avr 24.3
(0.3) 		15.4
(-3) 		25.5
(0.7) 		22.8
(-0.3) 		31.6
(3) 		18.3
(-1.9) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 8
(-0.6)
A 		7.6
(-0.8)
A 		13.4
(3)
A 		4.3
(-3)
A 		9
B 10.6
(1.8)
A 		11.6
(3)
P 		6.4
(-3)
A 		8.3
(-0.8)
P 		5
C 9.3
(0.3)
A 		9.2
(0.1)
A 		10.5
(3)
P 		7.8
(-3)
P 		3
avr 9.3
(1.5) 		9.5
(1.9) 		10.1
(3) 		6.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.9
(-0.8)
A 		5
(-1.3)
A 		2.8
(-2.4)
A 		1.6
(-3)
A 		13.4
(3)
A 		2.2
(-2.7)
A 		12
B 9
(-0.3)
P 		4.7
(-3)
A 		11.5
(1.2)
P 		14.4
(3)
P 		8.7
(-0.5)
A 		8.6
(-0.6)
A 		10
C 5.6
(0.1)
A 		5.5
(0)
A 		4.1
(-1)
A 		1.5
(-3)
A 		9.4
(3)
A 		7.7
(1.7)
P 		8
avr 6.8
(-1.1) 		5.1
(-3) 		6.1
(-1.9) 		5.8
(-2.2) 		10.5
(3) 		6.2
(-1.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193143_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9352
Sequence Type Exemplar sequence
Representative Public ID C06G8.4 NCBI
Target Description C06G8.4 /REP_DB=WormBase Gene ID /WP=CE05232 /GEN=srd-7 /TR=Q17760 /GB=CAA94325.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM chemoreceptor (srd-family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069600 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-7) (srd-7) mRNA, complete cds. 11/11 None
C06G8.4 ENSEMBL cdna:known chromosome:CEL140:IV:10785062:10786803:-1 gene:C06G8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028244 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10785067-10786809(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor (srd-family)
Gene Symbol srd-7
Ensembl C06G8.4
Entrez Gene 191797 Entrez gene
SwissProt Q17760 EMBL-EBI
WormBase CE05232 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94325 Hypothetical protein C06G8.4 [Caenorhabditis elegans] ref|NP_502001.1| Serpentine Receptor, class D (delta) family member (srd-7) [Caenorhabditis elegans] sp|Q17760|SRD7_CAEEL Serpentine receptor class delta-7 (Protein srd-7) 1.0E-173
blast AAB37993 Serpentine receptor, class d (delta) protein 8 [Caenorhabditis elegans] ref|NP_500839.1| Serpentine Receptor, class D (delta) family member (srd-8) [Caenorhabditis elegans] 1.0E-104
blast CAE72676 Hypothetical protein CBG19893 [Caenorhabditis briggsae] 9.0E-96
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502001.1 8 7-29,39-61,74-96,101-118,127-146,183-205,236-258,268-290
C06G8.4 8 7-29,39-61,74-96,101-118,127-146,183-205,236-258,268-290
Sequence
Target Sequence 
>C. ELEGANS:193143_AT
ttatattccttctttgattcaacttatatcaatgtgcttacaagaaatgaattttgatga
gcttcgaagcttgtccaaagaagtcgttccacaatacaatctgactggattaaccatcac
tggaagtcttgatttctttacatttgcaccgttttattgtttggttcatatggcaattat
cagttttcttattgctattggcattcatattttgagaaaaatgattattaatcgaatggt
tttgaacggagtagatgtgacgatcagatccagaaacttacacgctcagttgttaaggac
actctcattcaaagctaccgtacctattatctattattttggatgcatattcttcattct
tggtagaatttggatcaatccaatttttgaattttcaatatttgttccaactgtaattgt
tcccgtactcactccactttcagcatttattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATATTCCTTCTTTGATTCAACTT 434 679 417 Antisense
GCTTGTCCAAAGAAGTCGTTCCACA 104 307 485 Antisense
ATCTGACTGGATTAACCATCACTGG 379 33 515 Antisense
GATTTCTTTACATTTGCACCGTTTT 203 429 547 Antisense
ATCAGTTTTCTTATTGCTATTGGCA 604 29 595 Antisense
CAGATCCAGAAACTTACACGCTCAG 336 205 681 Antisense
ACGCTCAGTTGTTAAGGACACTCTC 567 89 698 Antisense
GACACTCTCATTCAAAGCTACCGTA 168 367 714 Antisense
AAGCTACCGTACCTATTATCTATTA 303 141 728 Antisense
TTGGATGCATATTCTTCATTCTTGG 169 709 755 Antisense
TCACTCCACTTTCAGCATTTATTCA 337 627 845 Antisense
Sequence Source Affymetrix Proprietary Database