[Home] | [Total List]

[193140_at] Human paired box protein like

Description C04G2.7 /REP_DB=WormBase Gene ID /WP=CE05215 /GEN=egl-38 /TR=Q17627 /GB=CAA94671.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Human paired box protein like
Cluster 6grp_total > 24      4grp_total > 50      6grp_cgc > 30      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 55.2
(-2.3)
A 		88.5
(3)
A 		51.1
(-3)
A 		68.5
(-0.2)
A 		37
B 44.3
(-2.9)
A 		57.3
(-0.9)
A 		83.1
(3)
A 		43.6
(-3)
A 		40
C 70
(2.4)
A 		71.8
(3)
A 		63
(-0.1)
P 		54.8
(-3)
A 		17
avr 56.5
(-2.7) 		72.5
(3) 		65.7
(0.6) 		55.6
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 67.9
(2.7)
A 		69.4
(3)
P 		60
(1.4)
A 		69.5
(3)
A 		34.1
(-3)
A 		48.3
(-0.6)
A 		35
B 103.4
(3)
P 		80.2
(0.5)
P 		83.1
(0.8)
A 		54.5
(-2.3)
A 		53.9
(-2.3)
P 		47.6
(-3)
A 		56
C 86.4
(2.2)
A 		87
(2.2)
A 		62.9
(0.4)
A 		97.1
(3)
A 		18.4
(-3)
A 		42.1
(-1.2)
A 		79
avr 85.9
(3) 		78.9
(2.2) 		68.7
(1) 		73.7
(1.5) 		35.5
(-3) 		46
(-1.8) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 20.1
(3)
A 		19.2
(2.5)
A 		13.4
(-1)
A 		10
(-3)
A 		10
B 14.1
(-0.1)
A 		14.1
(-0.1)
A 		19.3
(3)
A 		9.3
(-3)
A 		10
C 23.2
(3)
A 		20.7
(1.9)
A 		22
(2.5)
P 		9.2
(-3)
A 		14
avr 19.1
(3) 		18
(2.3) 		18.2
(2.4) 		9.5
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 12.5
(-2.1)
A 		24.7
(3)
P 		13.1
(-1.8)
A 		17.6
(0)
A 		10.3
(-3)
A 		11.8
(-2.4)
A 		14
B 36
(3)
P 		26.7
(0.4)
P 		20.2
(-1.4)
A 		14.4
(-3)
A 		21.9
(-0.9)
P 		17.7
(-2.1)
A 		22
C 32
(3)
A 		26.6
(1.8)
A 		16
(-0.7)
A 		19.5
(0.1)
A 		6
(-3)
A 		14.1
(-1.1)
A 		26
avr 26.8
(3) 		26
(2.7) 		16.4
(-1.4) 		17.2
(-1.1) 		12.7
(-3) 		14.5
(-2.2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193140_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9671
Sequence Type Exemplar sequence
Representative Public ID C04G2.7 NCBI
Target Description C04G2.7 /REP_DB=WormBase Gene ID /WP=CE05215 /GEN=egl-38 /TR=Q17627 /GB=CAA94671.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Human paired box protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069435(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069435 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-38) (egl-38) mRNA, complete cds. 11/11 None
SNAP00000040137 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10107007:10110384:-1 11/11 None
GENEFINDER00000040144 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10107007:10110384:-1 11/11 None
C04G2.7 ENSEMBL cdna:known chromosome:CEL140:IV:10106984:10110514:-1 gene:C04G2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10107012-10110390(-) 100.0 100.0
Public Domain and Genome References
Gene Title Human paired box protein like
Gene Symbol egl-38
Ensembl C04G2.7
Entrez Gene 177876 Entrez gene
SwissProt Q17627 EMBL-EBI
WormBase CE05215 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7275 development inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94671 Hypothetical protein C04G2.7 [Caenorhabditis elegans] ref|NP_501836.1| EGg Laying defective family member (egl-38) [Caenorhabditis elegans] gb|AAC27976.1| PAX protein [Caenorhabditis elegans] 1.0E-141
blast AAA93452 Pax (paired box) transcription factor protein 2 [Caenorhabditis elegans] ref|NP_500513.1| PAX (Paired box) transcription factor family member (pax-2) [Caenorhabditis elegans] 1.0E-116
blast AAQ93683 Pax protein [Caenorhabditis briggsae] 1.0E-98
Protein Domains
Database ID Description E-Value
scop a.4.1.Paired domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Paired domain 9.99999988726602E-27
scop a.4.1.Paired domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Paired domain 8.99999966742783E-28
Pfam IPR001523 EMBL-EBI Paired box protein, N-terminal 7.6E-78
Sequence
Target Sequence 
>C. ELEGANS:193140_AT
aagagaatgtcccgtcagtgtcttcaattaatcgaattgtacgaaataagtcatttatgg
ctcaactcgcggccccaacatccgtgacgtcatcagctgccaggccgtcctctgctacgt
cacatcatcaacgaagtcctccgagaggagtacaacaacatatgcaacaatctacttctg
tacaacagttacaacaattgcaattaacttctgcagctacagtaaactcactaatgactc
cgcctgctttcgcaatgcctggaacggcatattcaataaatggtcttctcggaacactcc
cacagccgtccctattggatgataaattcactaatttgtcgactcaatccgccgatatgt
ctcttgtttattcaactggacttgtcggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGAATGTCCCGTCAGTGTCTTC 301 153 428 Antisense
GTCATTTATGGCTCAACTCGCGGCC 136 467 477 Antisense
GTCACATCATCAACGAAGTCCTCCG 44 465 546 Antisense
GCAACAATCTACTTCTGTACAACAG 308 319 591 Antisense
GCAATTAACTTCTGCAGCTACAGTA 267 323 627 Antisense
AGTAAACTCACTAATGACTCCGCCT 650 61 648 Antisense
CCTGCTTTCGCAATGCCTGGAACGG 585 265 670 Antisense
CCACAGCCGTCCCTATTGGATGATA 276 275 727 Antisense
TAATTTGTCGACTCAATCCGCCGAT 301 635 759 Antisense
CGCCGATATGTCTCTTGTTTATTCA 194 257 777 Antisense
GTTTATTCAACTGGACTTGTCGGAG 391 447 793 Antisense
Sequence Source Affymetrix Proprietary Database