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[193139_at] Lectin C-type domain short and long forms

Description F49A5.3 /REP_DB=WormBase Gene ID /WP=CE16066 /TR=O45531 /GB=CAB04416.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 36      4grp_total > 03      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 31.5
(-2.3)
A 		24.3
(-3)
A 		31.4
(-2.3)
A 		86.9
(3)
A 		63
B 35.1
(-0.6)
A 		15.6
(-3)
A 		33.4
(-0.8)
A 		64.3
(3)
P 		49
C 47.8
(-1.7)
A 		36.4
(-3)
A 		36.3
(-3)
A 		89.5
(3)
P 		53
avr 38.1
(-1.6) 		25.4
(-3) 		33.7
(-2.1) 		80.2
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 5.4
(-2.2)
A 		3
(-2.7)
A 		4.6
(-2.4)
A 		1.8
(-3)
A 		12.2
(-0.7)
A 		28.9
(3)
A 		27
B 27.2
(3)
A 		3.3
(-3)
A 		25.2
(2.5)
A 		14.9
(-0.1)
A 		20.2
(1.2)
A 		8.7
(-1.6)
A 		24
C 25.4
(0.4)
A 		42.7
(3)
A 		20.3
(-0.4)
A 		12.6
(-1.6)
A 		3.4
(-3)
A 		9.4
(-2.1)
A 		39
avr 19.3
(3) 		16.3
(1.1) 		16.7
(1.4) 		9.8
(-3) 		11.9
(-1.7) 		15.7
(0.7) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.5
(2)
A 		5.3
(-3)
A 		8.2
(-0.6)
A 		12.7
(3)
A 		7
B 11.2
(1.5)
A 		3.8
(-3)
A 		7.7
(-0.6)
A 		13.7
(3)
P 		10
C 15.8
(3)
A 		10.5
(-3)
A 		12.7
(-0.5)
A 		15.1
(2.2)
P 		5
avr 12.8
(2.2) 		6.5
(-3) 		9.5
(-0.5) 		13.8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1
(-2.5)
A 		1.1
(-2.4)
A 		1
(-2.5)
A 		0.5
(-3)
A 		3.7
(-0)
A 		7
(3)
A 		7
B 9.4
(3)
A 		1.1
(-3)
A 		6.1
(0.6)
A 		3.9
(-1)
A 		8.2
(2.1)
A 		3.2
(-1.5)
A 		8
C 9.4
(1.2)
A 		13
(3)
A 		5.2
(-0.9)
A 		2.5
(-2.3)
A 		1.1
(-3)
A 		3.2
(-1.9)
A 		12
avr 6.6
(3) 		5.1
(0.9) 		4.1
(-0.5) 		2.3
(-3) 		4.3
(-0.2) 		4.5
(0.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193139_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13126
Sequence Type Exemplar sequence
Representative Public ID F49A5.3 NCBI
Target Description F49A5.3 /REP_DB=WormBase Gene ID /WP=CE16066 /TR=O45531 /GB=CAB04416.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074858(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074858 NCBI Caenorhabditis elegans C-type LECtin family member (clec-22) (clec-22) mRNA, complete cds. 11/11 None
SNAP00000001312 ENSEMBL cdna:SNAP chromosome:CEL140:V:16861010:16862621:1 11/11 None
F49A5.3 ENSEMBL cdna:known chromosome:CEL140:V:16861463:16862621:1 gene:F49A5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001323 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16861462-16862621(+) 93.45 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms
Gene Symbol clec-22
Ensembl F49A5.3
Entrez Gene 186003 Entrez gene
SwissProt O45531 EMBL-EBI
WormBase CE16066 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04416 Hypothetical protein F49A5.3 [Caenorhabditis elegans] ref|NP_507259.1| C-type LECtin family member (clec-22) [Caenorhabditis elegans] 1.0E-125
blast CAB04416 Hypothetical protein F49A5.3 [Caenorhabditis elegans] ref|NP_507259.1| C-type LECtin family member (clec-22) [Caenorhabditis elegans] 1.0E-116
blast CAB04422 Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] emb|CAA19439.2| Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] ref|NP_507257.2| C-type LECtin family member (clec-27) [Caenorhabditis elegans] 1.0E-103
blast CAB04740 Hypothetical protein T20B3.12 [Caenorhabditis elegans] ref|NP_507254.2| C-type LECtin family member (clec-26) [Caenorhabditis elegans] 4.0E-98
blast CAI79191 Hypothetical protein F49A5.5b [Caenorhabditis elegans] ref|NP_001023951.1| C-type LECtin family member (clec-28) [Caenorhabditis elegans] 8.0E-71
blast CAB04417 Hypothetical protein F49A5.5a [Caenorhabditis elegans] ref|NP_001023950.1| C-type LECtin family member (clec-28) [Caenorhabditis elegans] 8.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.6E-4
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-6
Pfam IPR001304 EMBL-EBI C-type lectin 2.6E-8
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000001312 2 36-58,253-272
Sequence
Target Sequence 
>C. ELEGANS:193139_AT
taacctgtggacgggcttgatgtactatgcggatgaccctttttcatgcacttgggatgt
taacagtggaaccacggaagcctaccataactttgccgaggatcatccaaataatgagta
tggagactgcatttattacatgacaactggaacacaagccgggaactgggcaaatggatc
gtgtacggagactatgagttttgtgtgtgagctaccagcaactgtttacgataaaaattg
caaatacaactacgaaaactattgctacaccccatacaatcaattggaaacttccagaga
tgcgaagaacttttgcgcatcatcgggttccaatttgacatcaattcattccgcaaatga
aaatcgctttcttgtgagcattctaccatcttattcaataattgtacttggtggatttgc
tttttcaaagaatgttgtcctatggcttgatggaacacctacgattttcatcaatgcaat
attgattaatagagggaattgtcttttcctctcaagccaaaacggacactggtttggtta
cgattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACCTGTGGACGGGCTTGATGTAC 355 637 102 Antisense
TGTACTATGCGGATGACCCTTTTTC 57 561 122 Antisense
GACCCTTTTTCATGCACTTGGGATG 207 377 136 Antisense
ACAGTGGAACCACGGAAGCCTACCA 495 103 164 Antisense
GAAGCCTACCATAACTTTGCCGAGG 344 343 178 Antisense
CTACGAAAACTATTGCTACACCCCA 90 227 351 Antisense
TTGTGAGCATTCTACCATCTTATTC 303 709 473 Antisense
AGAATGTTGTCCTATGGCTTGATGG 591 75 530 Antisense
GAACACCTACGATTTTCATCAATGC 606 351 554 Antisense
TCTTTTCCTCTCAAGCCAAAACGGA 189 591 603 Antisense
ACGGACACTGGTTTGGTTACGATTG 112 95 623 Antisense
Sequence Source Affymetrix Proprietary Database