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[193138_at]

Description F43G6.4 /REP_DB=WormBase Gene ID /WP=CE20787 /TR=Q20373 /GB=CAA90401.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transcriptional regulatory protein (RPD3)
Cluster 6grp_high1_10_10 > 84      6grp_total > 74      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1268
1 2 3 4 range
A 284.2
(-2.5)
P 		175.4
(-3)
A 		253.5
(-2.6)
P 		1418.4
(3)
P 		1243
B 254
(-2.7)
P 		254.8
(-2.7)
A 		209.1
(-3)
P 		1244.1
(3)
P 		1035
C 176.2
(-2.9)
M 		244
(-2.5)
M 		150.5
(-3)
P 		1392.3
(3)
P 		1242
avr 238.1
(-2.8) 		224.7
(-2.9) 		204.4
(-3) 		1351.6
(3) 		1147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 363
1 2 3 4 5 6 range
A 264
(-3)
A 		280.1
(-2.6)
P 		402.1
(0.6)
P 		489.8
(2.9)
P 		398.6
(0.5)
P 		494.8
(3)
P 		231
B 214.1
(-3)
A 		264
(-1.8)
P 		389.9
(1.1)
P 		469.9
(3)
P 		363.1
(0.5)
P 		453.3
(2.6)
P 		256
C 187
(-3)
P 		249
(-2)
P 		462
(1.5)
P 		470.8
(1.7)
P 		406.5
(0.6)
P 		549.8
(3)
P 		363
avr 221.7
(-3) 		264.4
(-2.1) 		418
(1.2) 		476.8
(2.5) 		389.4
(0.6) 		499.3
(3) 		278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 103.5
(-0.7)
P 		38.1
(-3)
A 		66.3
(-2)
P 		207.6
(3)
P 		170
B 81
(-2.1)
P 		62.9
(-2.6)
A 		48.5
(-3)
P 		265.1
(3)
P 		217
C 58.3
(-2.8)
M 		70.1
(-2.4)
M 		52.4
(-3)
P 		234.8
(3)
P 		182
avr 80.9
(-2.2) 		57
(-3) 		55.7
(-3) 		235.8
(3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 48.7
(-3)
A 		99.6
(1)
P 		87.6
(0.1)
P 		124.2
(3)
P 		120.3
(2.7)
P 		120.5
(2.7)
P 		76
B 74.5
(-3)
A 		87.9
(-2.1)
P 		94.7
(-1.7)
P 		124.5
(0.2)
P 		147.5
(1.6)
P 		169
(3)
P 		95
C 69.3
(-3)
P 		76
(-2.6)
P 		117.6
(-0.5)
P 		94.7
(-1.7)
P 		131.6
(0.3)
P 		184.1
(3)
P 		115
avr 64.2
(-3) 		87.8
(-1.5) 		100
(-0.7) 		114.5
(0.2) 		133.1
(1.4) 		157.9
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193138_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3683
Sequence Type Exemplar sequence
Representative Public ID F43G6.4 NCBI
Target Description F43G6.4 /REP_DB=WormBase Gene ID /WP=CE20787 /TR=Q20373 /GB=CAA90401.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transcriptional regulatory protein (RPD3)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171045(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171045 NCBI Caenorhabditis elegans F43G6.11a (F43G6.11) mRNA, complete cds. 11/11 None
SNAP00000023954 ENSEMBL cdna:SNAP chromosome:CEL140:II:11801575:11802261:1 11/11 None
GENEFINDER00000023972 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11798942:11802261:1 11/11 None
F43G6.11a ENSEMBL cdna:known chromosome:CEL140:II:11798942:11802300:1 gene:F43G6.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171044 8/11 Cross Hyb Matching Probes None
SNAP00000023955 8/11 Cross Hyb Matching Probes None
GENEFINDER00000023967 8/11 Cross Hyb Matching Probes None
F43G6.11b 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174811 2 1 NM_171045 193138_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11790664-11802258(+) 100.0 100.0
Public Domain and Genome References
Ensembl F43G6.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD45592 Hypothetical protein F43G6.11a [Caenorhabditis elegans] ref|NP_741051.1| F43G6.11a [Caenorhabditis elegans] 0.0
blast CAD45593 Hypothetical protein F43G6.11b [Caenorhabditis elegans] ref|NP_741050.1| F43G6.11b [Caenorhabditis elegans] 0.0
blast CAE59696 Hypothetical protein CBG03124 [Caenorhabditis briggsae] 0.0
blast CAD45592 Hypothetical protein F43G6.11a [Caenorhabditis elegans] ref|NP_741051.1| F43G6.11a [Caenorhabditis elegans] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR000286 EMBL-EBI Histone deacetylase superfamily 4.9E-56
Sequence
Target Sequence 
>C. ELEGANS:193138_AT
tacaactacaccgagagcgcttctatgatggtccgaggacttctcaatcttcctctcccg
cgcctcgacatccctgaaagaatctccggagctctcctagaaactacctggaacattctg
aatcatcactcggaatggtacccgaagcttggagaacgactgaaactcctggagcaccag
cagaaagagcttggactaccacaattcgcatttgatcagacaatgtttttgggtgagaag
atgagaaagatgtatgatgatatgaagaagcataggattgtcagaactagagaatggttt
ccagaaatgtcagatgatcaggtggcagtttgtaagcagaagatagatgaatatatccaa
gaatacgaattcacttccgagcatcctactccaagtgaatcacagctagttgctcagtgt
gtctgggatgaagctgcgaggtctgacgccttcctccaagcaatcccatttgccacggct
ttggtccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAACTACACCGAGAGCGCTTCTA 31 643 1744 Antisense
GCGCTTCTATGATGGTCCGAGGACT 577 287 1760 Antisense
GTCCGAGGACTTCTCAATCTTCCTC 681 475 1774 Antisense
CTCGACATCCCTGAAAGAATCTCCG 51 233 1807 Antisense
GAATCTCCGGAGCTCTCCTAGAAAC 411 329 1823 Antisense
AGAACGACTGAAACTCCTGGAGCAC 545 73 1896 Antisense
GAGCTTGGACTACCACAATTCGCAT 419 389 1930 Antisense
TTCCGAGCATCCTACTCCAAGTGAA 346 697 2118 Antisense
ACAGCTAGTTGCTCAGTGTGTCTGG 244 109 2145 Antisense
ATGAAGCTGCGAGGTCTGACGCCTT 143 45 2171 Antisense
CCATTTGCCACGGCTTTGGTCCAAG 687 269 2209 Antisense
Sequence Source Affymetrix Proprietary Database