[Home] | [Total List]

[193137_at] acetylglucosaminyltransferase

Description T15D6.2 /REP_DB=WormBase Gene ID /WP=CE13682 /GEN=gly-16 /TR=O02314 /GB=CAB05620.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=acetylglucosaminyltransferase
Cluster 6grp_total > 33      4grp_total > 18      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 14.1
(-3)
A 		15.7
(-2.8)
A 		25
(-1.9)
A 		72.3
(3)
A 		58
B 8.7
(-3)
A 		21.5
(-1.9)
A 		17.4
(-2.2)
A 		77.4
(3)
A 		69
C 23.6
(-2.1)
A 		61.5
(3)
A 		17.2
(-3)
A 		18.2
(-2.9)
A 		44
avr 15.5
(-3) 		32.9
(-0.4) 		19.9
(-2.3) 		56
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 90.5
(3)
A 		22.1
(-2.4)
A 		77.7
(2)
A 		15.9
(-2.9)
A 		53.6
(0.1)
A 		15.1
(-3)
A 		75
B 65
(3)
A 		31.3
(-0.7)
A 		61.6
(2.6)
A 		12.9
(-2.8)
A 		47.3
(1)
A 		10.7
(-3)
A 		54
C 28.8
(-1.3)
A 		40.5
(0.6)
A 		38
(0.2)
A 		18.1
(-3)
A 		55.7
(3)
A 		28.4
(-1.4)
A 		38
avr 61.4
(3) 		31.3
(-0.9) 		59.1
(2.7) 		15.6
(-3) 		52.2
(1.8) 		18.1
(-2.7) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 5.1
(-1.6)
A 		3.4
(-3)
A 		6.5
(-0.4)
A 		10.6
(3)
A 		7
B 2.8
(-3)
A 		5.3
(-1.9)
A 		4
(-2.5)
A 		16.5
(3)
A 		14
C 7.8
(-1.1)
A 		17.7
(3)
A 		6
(-1.8)
A 		3.1
(-3)
A 		15
avr 5.2
(-3) 		8.8
(1.4) 		5.5
(-2.6) 		10.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 16.7
(2.9)
A 		7.8
(-1.1)
A 		16.9
(3)
A 		4
(-2.9)
A 		16.2
(2.7)
A 		3.7
(-3)
A 		13
B 22.6
(3)
A 		10.4
(-0.8)
A 		15
(0.6)
A 		3.4
(-3)
A 		19.2
(1.9)
A 		4
(-2.8)
A 		19
C 10.7
(-0)
A 		12.4
(0.7)
A 		9.7
(-0.5)
A 		3.6
(-3)
A 		18
(3)
A 		9.5
(-0.5)
A 		14
avr 16.7
(2.5) 		10.2
(-0.2) 		13.9
(1.3) 		3.7
(-3) 		17.8
(3) 		5.7
(-2.1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193137_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.999
Sequence Type Exemplar sequence
Representative Public ID T15D6.2 NCBI
Target Description T15D6.2 /REP_DB=WormBase Gene ID /WP=CE13682 /GEN=gly-16 /TR=O02314 /GB=CAB05620.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=acetylglucosaminyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060734(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060734 NCBI Caenorhabditis elegans T15D6.2 (acetylglucosaminyltransferase) mRNA, complete cds. 10/11 None
T15D6.2 ENSEMBL cdna:known chromosome:CEL140:I:12387398:12389154:-1 gene:T15D6.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012757 6/11 Cross Hyb Matching Probes None
SNAP00000012743 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12387387-12389085(-) 100.0 100.0
Public Domain and Genome References
Gene Title acetylglucosaminyltransferase
Gene Symbol gly-16
Ensembl T15D6.2
Entrez Gene 173109 Entrez gene
SwissProt O02314 EMBL-EBI
WormBase CE30564 Wormbase
Functional Annotations
Ortholog
ID Title Organism
HG-U133_PLUS_2:211020_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U133A:211020_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-FOCUS:211020_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U133A_2:211020_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HUGENEFL:L41607_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
U133_X3P:G307297_3P_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
U133_X3P:HS.116346.0.A1_3P_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U133_PLUS_2:230788_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U133B:230788_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U95AV2:35033_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U95E:76133_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
U133_X3P:HS.288489.0.S1_3P_X_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
U133_X3P:HS.288489.0.S1_3P_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
U133_X3P:HS.189413.0.A1_3P_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
U133_X3P:215595_3P_X_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U133A_2:215595_X_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U133_PLUS_2:215595_X_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U133A:215595_X_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U133_PLUS_2:239606_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U133B:239606_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U95E:68063_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U133A_2:215593_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U133_PLUS_2:215593_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
HG-U133A:215593_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme hs
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8375 acetylglucosaminyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05620 Hypothetical protein T15D6.2 [Caenorhabditis elegans] ref|NP_493135.2| T15D6.2 [Caenorhabditis elegans] gb|AAK94760.1| GLY-16 [Caenorhabditis elegans] 0.0
blast CAA95817 Hypothetical protein F22D6.11 [Caenorhabditis elegans] ref|NP_492014.4| F22D6.11 [Caenorhabditis elegans] 1.0E-174
blast AAK94762 GLY-18 [Caenorhabditis elegans] 1.0E-167
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 1.2E-92
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493135.2 1 7-26
T15D6.2 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:193137_AT
gaatcgacgccttctaggtcaaaatgaaacagagtctcctctcccgcttttcaaatcgtc
gctgtcttccctgataccaagaaaggctgccaattacttagcttcatccagcattcctca
acagctactggaatttcttcggaacacttgggttgctgatgaaggattctgggggactct
atttggaaacaaaggcttgtttgatgttccgggatcattgaattttgaagagcatcaaat
ttggtttgaatccgggtgccacaatcacatgaaagatggatcatgtgtttttggaattgg
agatgtttcaaacttattgcaggcaaaagctttagtagctcataagctttacctaacatc
agagccagaagcttatttttgcttattaaaggtttgtggaagctcaatgagcccaggaaa
tgagcatcgtcgtcgaacattgaaccctgactcaacatttgatgcttccaaatactcaga
attgccccaagtcgaaatatcacaagaccgtcccgtgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGACGCCTTCTAGGTCAAAAT 201 329 669 Antisense
GCTGTCTTCCCTGATACCAAGAAAG 479 293 729 Antisense
GGCTGCCAATTACTTAGCTTCATCC 44 541 753 Antisense
TCCAGCATTCCTCAACAGCTACTGG 677 589 775 Antisense
AAGGCTTGTTTGATGTTCCGGGATC 137 159 860 Antisense
TGAATCCGGGTGCCACAATCACATG 587 575 915 Antisense
GAGCCCAGGAAATGAGCATCGTCGT 457 385 1077 Antisense
CATCGTCGTCGAACATTGAACCCTG 398 211 1093 Antisense
GAACCCTGACTCAACATTTGATGCT 49 347 1110 Antisense
AATACTCAGAATTGCCCCAAGTCGA 530 171 1139 Antisense
AAATATCACAAGACCGTCCCGTGTC 256 117 1163 Antisense
Sequence Source Affymetrix Proprietary Database