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[193136_at] Lectin C-type domain short and long forms

Description C30H6.4 /REP_DB=WormBase Gene ID /WP=CE15648 /TR=O45275 /GB=CAB02809.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 90      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 9.4
(-3)
A 		63.8
(0.6)
A 		11
(-2.9)
A 		101.1
(3)
A 		92
B 22.1
(0.8)
A 		12.6
(-1.6)
A 		30.8
(3)
A 		7.3
(-3)
A 		24
C 6.6
(-3)
A 		10.8
(-2.3)
A 		44.5
(3)
A 		12.1
(-2.1)
A 		38
avr 12.7
(-3) 		29.1
(0.6) 		28.8
(0.5) 		40.2
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 5.4
(-1.7)
A 		5.5
(-1.6)
A 		4.3
(-3)
A 		9.4
(2.9)
A 		8.3
(1.6)
A 		9.5
(3)
A 		5
B 27.1
(3)
A 		6.3
(-2.5)
A 		4.6
(-3)
A 		19.2
(0.9)
A 		4.7
(-3)
A 		4.7
(-3)
A 		23
C 12.9
(-1.5)
A 		5.9
(-2.5)
A 		2.7
(-3)
A 		43.8
(3)
A 		28
(0.7)
A 		4.9
(-2.7)
A 		41
avr 15.1
(0.3) 		5.9
(-2.4) 		3.9
(-3) 		24.1
(3) 		13.7
(-0.1) 		6.4
(-2.3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.4
(-2.7)
A 		13.9
(2.5)
A 		2.9
(-3)
A 		14.8
(3)
A 		12
B 7.1
(3)
A 		3.1
(-1.4)
A 		7.1
(3)
A 		1.6
(-3)
A 		6
C 2.2
(-2.9)
A 		3.1
(-2.5)
A 		15.5
(3)
A 		2
(-3)
A 		14
avr 4.2
(-3) 		6.7
(0.5) 		8.5
(3) 		6.1
(-0.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1
(-2.6)
A 		2
(1.1)
A 		0.9
(-3)
A 		2.4
(2.6)
A 		2.5
(3)
A 		2.3
(2.3)
A 		2
B 9.4
(3)
A 		2.1
(-2.3)
A 		1.1
(-3)
A 		5.1
(-0.1)
A 		1.9
(-2.4)
A 		1.8
(-2.5)
A 		8
C 4.8
(-0.1)
A 		1.8
(-2.2)
A 		0.7
(-3)
A 		8.8
(2.8)
A 		9.1
(3)
A 		1.6
(-2.4)
A 		8
avr 5.1
(2.6) 		2
(-1.5) 		0.9
(-3) 		5.4
(3) 		4.5
(1.8) 		1.9
(-1.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193136_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9262
Sequence Type Exemplar sequence
Representative Public ID C30H6.4 NCBI
Target Description C30H6.4 /REP_DB=WormBase Gene ID /WP=CE15648 /TR=O45275 /GB=CAB02809.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070694(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070694 NCBI Caenorhabditis elegans C30H6.4 (C30H6.4) mRNA, complete cds. 11/11 None
C30H6.4 ENSEMBL cdna:known chromosome:CEL140:IV:17361398:17364429:1 gene:C30H6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029648 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029666 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17361403-17364435(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms
Ensembl C30H6.4
Entrez Gene 183067 Entrez gene
SwissProt O45275 EMBL-EBI
WormBase CE15648 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02809 Hypothetical protein C30H6.4 [Caenorhabditis elegans] ref|NP_503095.1| C30H6.4 [Caenorhabditis elegans] 0.0
blast CAB05164 Hypothetical protein C49C3.13 [Caenorhabditis elegans] ref|NP_503091.2| C49C3.13 [Caenorhabditis elegans] 1.0E-42
blast CAE57434 Hypothetical protein CBG00395 [Caenorhabditis briggsae] 3.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 5.2E-8
Sequence
Target Sequence 
>C. ELEGANS:193136_AT
ggatctccaactgattgcctttggtggcaaccagactatccaaaatctgagtttgcagaa
ttcagctgtgtcactatttgggaaactgattggctatacgacaatccagcatacatccct
ggtcagtatgatgatatgaaagagtgtagtgatgatggatcaaatactcctacaacaacg
actactatgcaaacaacaacaccttctactacttccactccgacaacaacgtcaacaacc
actactacatccgctagcacaaccactatttcaacaacaaaacctcccacaacacaaatt
gatatcgaaaaatgcacaagtaactgccccgttggctggatttattttggcggtctttgc
tactcgaaaatccaaggtcccggaagatttgttgattttaattctgagtgtaccagactg
ggcggaaaacttggtgaagtttctggagcagatggaaatgaagctttaagactagctctc
accagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCTCCAACTGATTGCCTTTGGT 346 511 538 Antisense
GCAGAATTCAGCTGTGTCACTATTT 615 313 592 Antisense
GACAATCCAGCATACATCCCTGGTC 351 365 637 Antisense
AATACTCCTACAACAACGACTACTA 240 173 700 Antisense
CAAACAACAACACCTTCTACTACTT 663 189 727 Antisense
TTCCACTCCGACAACAACGTCAACA 558 699 750 Antisense
CCGCTAGCACAACCACTATTTCAAC 201 263 788 Antisense
TAACTGCCCCGTTGGCTGGATTTAT 689 637 858 Antisense
TATTTTGGCGGTCTTTGCTACTCGA 393 661 880 Antisense
GCTACTCGAAAATCCAAGGTCCCGG 644 301 896 Antisense
GCTTTAAGACTAGCTCTCACCAGTA 558 303 1000 Antisense
Sequence Source Affymetrix Proprietary Database