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[193135_at] acetylglucosaminyltransferase

Description T15D6.3 /REP_DB=WormBase Gene ID /WP=CE13684 /GEN=gly-17 /TR=O02315 /GB=CAB05621.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=acetylglucosaminyltransferase
Cluster 6grp_total > 62      4grp_total > 48      6grp_cgc > 76      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 8.5
(-3)
A 		28.3
(1.1)
A 		37.2
(3)
A 		26.5
(0.8)
A 		29
B 7.5
(-3)
A 		22.8
(-0.4)
A 		43.2
(3)
A 		14.6
(-1.8)
A 		36
C 41.9
(3)
A 		39.7
(2.3)
A 		25.4
(-2.2)
A 		22.8
(-3)
A 		19
avr 19.3
(-3) 		30.3
(1.1) 		35.3
(3) 		21.3
(-2.3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 15.7
(-0.9)
A 		6.9
(-3)
A 		32.2
(3)
A 		15.5
(-1)
A 		21.9
(0.6)
A 		9
(-2.5)
A 		25
B 2.9
(-3)
A 		4.4
(-2.8)
A 		44.5
(3)
A 		20.4
(-0.5)
A 		17.6
(-0.9)
A 		5.9
(-2.6)
A 		42
C 7.1
(-3)
A 		10.9
(-2.5)
A 		13.5
(-2.2)
A 		52.4
(3)
P 		11.3
(-2.4)
A 		14.9
(-2)
A 		45
avr 8.6
(-2.7) 		7.4
(-3) 		30.1
(3) 		29.4
(2.8) 		16.9
(-0.5) 		9.9
(-2.3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.1
(-3)
A 		6.2
(-0.2)
A 		9.7
(3)
A 		3.9
(-2.3)
A 		7
B 2.4
(-3)
A 		5.6
(-0.5)
A 		10
(3)
A 		3.1
(-2.4)
A 		8
C 13.9
(3)
A 		11.4
(1.5)
A 		8.8
(-0.1)
A 		3.9
(-3)
A 		10
avr 6.5
(-0.1) 		7.7
(1.2) 		9.5
(3) 		3.6
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.9
(-2.1)
A 		2.4
(-2.8)
A 		7
(3)
A 		3.9
(-0.9)
A 		6.6
(2.5)
A 		2.2
(-3)
A 		5
B 1
(-3)
A 		1.5
(-2.7)
A 		10.8
(3)
A 		5.4
(-0.3)
A 		7.1
(0.7)
A 		2.2
(-2.3)
A 		10
C 2.6
(-3)
A 		3.3
(-2.5)
A 		3.4
(-2.4)
A 		10.5
(3)
P 		3.6
(-2.2)
A 		5
(-1.2)
A 		8
avr 2.2
(-3) 		2.4
(-2.8) 		7.1
(3) 		6.6
(2.4) 		5.8
(1.4) 		3.1
(-1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193135_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.892
Sequence Type Exemplar sequence
Representative Public ID T15D6.3 NCBI
Target Description T15D6.3 /REP_DB=WormBase Gene ID /WP=CE13684 /GEN=gly-17 /TR=O02315 /GB=CAB05621.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=acetylglucosaminyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060733(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060733 NCBI Caenorhabditis elegans T15D6.3 (acetylglucosaminyltransferase) mRNA, complete cds. 10/11 None
GENEFINDER00000012757 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12382327:12389154:-1 10/11 None
T15D6.3 ENSEMBL cdna:known chromosome:CEL140:I:12385026:12386796:-1 gene:T15D6.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012742 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12384956-12386727(-) 100.0 100.0
Public Domain and Genome References
Gene Title acetylglucosaminyltransferase
Gene Symbol gly-17
Ensembl T15D6.3
Entrez Gene 173108 Entrez gene
SwissProt O02315 EMBL-EBI
WormBase CE30565 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.15211.1.S1_AT similar to glucosaminyl (N-acetyl) transferase 2 isoform C cfa
CANINE_2:CFAAFFX.15212.1.S1_AT similar to glucosaminyl (N-acetyl) transferase 2 isoform C cfa
CHICKEN:GGAAFFX.8101.2.S1_S_AT similar to glucosaminyl (N-acetyl) transferase 2 isoform A; I beta-1,6-N-acetylglucosaminyltransferase; blood group Ii; N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase; Ii blood group; glucosaminyl (N-acetyl) transferase 5 ... gga
MOE430A:1450238_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOUSE430A_2:1450238_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOUSE430_2:1450238_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOUSE430A_2:1425503_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOE430A:1425503_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOUSE430_2:1425503_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOUSE430_2:1438660_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOE430B:1438660_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MU11KSUBA:U68182_S_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MG-U74AV2:95392_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MG-U74CV2:165626_F_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MG-U74CV2:170965_I_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOE430A:1421415_S_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOUSE430A_2:1421415_S_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOUSE430_2:1421415_S_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOE430A:1430826_S_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOUSE430A_2:1430826_S_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOUSE430_2:1430826_S_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOE430A:1453674_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOUSE430A_2:1453674_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOUSE430_2:1453674_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOE430A:1451733_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOUSE430A_2:1451733_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOUSE430_2:1451733_AT glucosaminyl (N-acetyl) transferase 2, I-branching enzyme mm
MOE430A:1437607_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (Gcnt2), transcript variant 2, mRNA mm
MOUSE430A_2:1437607_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (Gcnt2), transcript variant 2, mRNA mm
MOUSE430_2:1437607_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (Gcnt2), transcript variant 2, mRNA mm
MU19KSUBC:TC35483_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (Gcnt2), transcript variant 2, mRNA mm
MU19KSUBC:TC36708_AT Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (Gcnt2), transcript variant 2, mRNA mm
RG-U34C:RC_AI234819_AT hypothetical gene supported by NM_001001511 rn
RAE230A:1374903_AT hypothetical gene supported by NM_001001511 rn
RAT230_2:1374903_AT hypothetical gene supported by NM_001001511 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8375 acetylglucosaminyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05621 Hypothetical protein T15D6.3 [Caenorhabditis elegans] ref|NP_493134.2| T15D6.3 [Caenorhabditis elegans] 0.0
blast CAB05620 Hypothetical protein T15D6.2 [Caenorhabditis elegans] ref|NP_493135.2| T15D6.2 [Caenorhabditis elegans] gb|AAK94760.1| GLY-16 [Caenorhabditis elegans] 0.0
blast CAB05464 Hypothetical protein C54C8.2 [Caenorhabditis elegans] ref|NP_493157.1| C54C8.2 [Caenorhabditis elegans] 1.0E-168
blast CAB05620 Hypothetical protein T15D6.2 [Caenorhabditis elegans] ref|NP_493135.2| T15D6.2 [Caenorhabditis elegans] gb|AAK94760.1| GLY-16 [Caenorhabditis elegans] 1.0E-159
blast AAK94761 GLY-17 [Caenorhabditis elegans] 1.0E-154
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 4.1E-86
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 4.8E-86
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 2.9E-80
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493134.2 1 7-29
T15D6.3 1 7-29
GENEFINDER00000012757 2 4-26,381-403
Sequence
Target Sequence 
>C. ELEGANS:193135_AT
gtacatacgaggatcgcctcctaaatggaaaaaataaaaccgaatctccactcccgctct
tcaagtcttcactgtcctccctaataccaagaaaagctgccaattatttatcttcatcca
gcgttcctcaacaattactagaatttcttcggacaacttgggttgctgatgaaggattct
gggggactctattcggtaacaaggacttgttcaatgttccgggatcatttaacttcaatg
atcctctcacaaatggttggggcaattacgtatccagacaccaactttgggttgaatccg
agtgtcacaactatatgaaagatcgatcatgtgtttttggaattggagatgttccaaact
taatgaagtcaagagcattggtggctcataagctttacatagaatcagagccagaagctt
ttttctgtctattaaaggtttgtggaggtttaattcactgtcagaaaacaatttgttttc
agagacaccgtcatcgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACATACGAGGATCGCCTCCTAAA 709 459 689 Antisense
CTGTCCTCCCTAATACCAAGAAAAG 597 239 760 Antisense
ATTATTTATCTTCATCCAGCGTTCC 549 13 791 Antisense
ATCCAGCGTTCCTCAACAATTACTA 357 33 804 Antisense
CTGGGGGACTCTATTCGGTAACAAG 145 241 867 Antisense
GACTTGTTCAATGTTCCGGGATCAT 175 371 892 Antisense
TTTAACTTCAATGATCCTCTCACAA 168 673 916 Antisense
GATCCTCTCACAAATGGTTGGGGCA 540 415 928 Antisense
GGGCAATTACGTATCCAGACACCAA 181 493 948 Antisense
CTTTGGGTTGAATCCGAGTGTCACA 198 13 973 Antisense
GTTTTCAGAGACACCGTCATCGAAC 685 447 1163 Antisense
Sequence Source Affymetrix Proprietary Database