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[193133_s_at]

Description ZK337.1A /REP_DB=WormBase Gene ID /WP=CE16718 /TR=O46015 /GB=CAB05006.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Alpha-2-macroglobulin family (3 domains)
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 07      4grp_highest_8_8 > 42      4grp_high_8_8 > 41      6grp_highest_nonorm > 10      6grp_total > 08      4grp_total > 55      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 800
1 2 3 4 range
A 1424.8
(3)
P 		744.7
(-2.6)
P 		944.5
(-0.9)
P 		694
(-3)
P 		731
B 1368.2
(3)
P 		892.7
(-1.7)
P 		824.5
(-2.4)
P 		767.3
(-3)
P 		601
C 1261.3
(3)
P 		1061.6
(1.1)
P 		1016.3
(0.7)
P 		625.2
(-3)
P 		636
avr 1351.4
(3) 		899.7
(-1.1) 		928.4
(-0.9) 		695.5
(-3) 		656

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1007
1 2 3 4 5 6 range
A 1851.7
(3)
P 		1436.4
(0.1)
P 		1120.7
(-2.1)
P 		1338.9
(-0.6)
P 		1191.6
(-1.6)
P 		989
(-3)
P 		863
B 1903.9
(3)
P 		1351.3
(-0.3)
P 		1433.5
(0.2)
P 		1394.9
(-0)
P 		1053.2
(-2.1)
P 		897.2
(-3)
P 		1007
C 1901.6
(3)
P 		1232.7
(-1)
P 		1340.8
(-0.4)
P 		1315.3
(-0.5)
P 		1170.3
(-1.4)
P 		902.4
(-3)
P 		999
avr 1885.7
(3) 		1340.1
(-0.4) 		1298.3
(-0.7) 		1349.7
(-0.4) 		1138.4
(-1.7) 		929.5
(-3) 		956
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 417
1 2 3 4 range
A 518.8
(3)
P 		161.7
(-2.1)
P 		246.9
(-0.9)
P 		101.6
(-3)
P 		417
B 436.3
(3)
P 		220.5
(-1.7)
P 		191.1
(-2.4)
P 		163.5
(-3)
P 		273
C 417.5
(3)
P 		305.2
(0.8)
P 		354.2
(1.8)
P 		105.4
(-3)
P 		312
avr 457.5
(3) 		229.1
(-1.1) 		264.1
(-0.5) 		123.5
(-3) 		334

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 464
1 2 3 4 5 6 range
A 341.3
(-0.8)
P 		510.8
(3)
P 		244.1
(-2.9)
P 		339.6
(-0.8)
P 		359.6
(-0.4)
P 		240.8
(-3)
P 		270
B 662.5
(3)
P 		449.8
(-0.9)
P 		348.1
(-2.8)
P 		369.5
(-2.4)
P 		427.9
(-1.3)
P 		334.6
(-3)
P 		328
C 704.8
(3)
P 		376.1
(-1.5)
P 		341.3
(-2)
P 		264.5
(-3)
P 		378.7
(-1.4)
P 		302.1
(-2.5)
P 		440
avr 569.5
(3) 		445.6
(0.3) 		311.2
(-2.6) 		324.5
(-2.3) 		388.7
(-0.9) 		292.5
(-3) 		277
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193133_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1218
Sequence Type Exemplar sequence
Representative Public ID ZK337.1A NCBI
Target Description ZK337.1A /REP_DB=WormBase Gene ID /WP=CE16718 /TR=O46015 /GB=CAB05006.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Alpha-2-macroglobulin family (3 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026696(11), NM_061212(10), NM_061213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026696 NCBI Caenorhabditis elegans ZK337.1c (ZK337.1) mRNA, complete cds. 11/11 None
NM_061212 NCBI Caenorhabditis elegans ZK337.1b (ZK337.1) mRNA, complete cds. 10/11 A 
NM_061213 NCBI Caenorhabditis elegans ZK337.1a (ZK337.1) mRNA, complete cds. 11/11 A 
SNAP00000024739 ENSEMBL cdna:SNAP chromosome:CEL140:I:15002891:15009571:1 11/11 None
GENEFINDER00000024765 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:15002891:15009571:1 11/11 None
ZK337.1c.2 ENSEMBL cdna:known chromosome:CEL140:I:15001939:15009763:1 gene:ZK337.1 11/11 None
ZK337.1c.1 ENSEMBL cdna:known chromosome:CEL140:I:15002889:15009787:1 gene:ZK337.1 11/11 None
ZK337.1a ENSEMBL cdna:known chromosome:CEL140:I:15002891:15009571:1 gene:ZK337.1 11/11 A 
ZK337.1b ENSEMBL cdna:known chromosome:CEL140:I:15002891:15009787:1 gene:ZK337.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15002821-15009502(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK337.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD98728 Hypothetical protein ZK337.1c [Caenorhabditis elegans] ref|NP_001021867.1| ZK337.1c [Caenorhabditis elegans] 0.0
blast CAB05006 Hypothetical protein ZK337.1a [Caenorhabditis elegans] ref|NP_493614.1| ZK337.1a [Caenorhabditis elegans] 0.0
blast CAB05007 Hypothetical protein ZK337.1b [Caenorhabditis elegans] ref|NP_493613.2| ZK337.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001599 EMBL-EBI Alpha-2-macroglobulin 3.2E-112
Pfam IPR002890 EMBL-EBI Alpha-2-macroglobulin, N-terminal 3.1E-25
Pfam IPR002890 EMBL-EBI Alpha-2-macroglobulin, N-terminal 1.1E-17
Pfam IPR001599 EMBL-EBI Alpha-2-macroglobulin 3.2E-112
Pfam IPR001599 EMBL-EBI Alpha-2-macroglobulin 3.2E-112
Sequence
Target Sequence 
>C. ELEGANS:193133_S_AT
aactggtgtggtcttcgctcagttgagttattcttactacagggactctttgaatgacga
tgctccgttcttctgctcccaggagatcaaggaaataagagctggaaatcgactgcaatt
ggatttgtgttgcaactatacccgtcctggaaagtctaacatggctctagccgaaattga
tgccttgagtggttaccgattcgatgcggaacaggtgcatactttgacaagtattgagga
tttgcaaagggtggagatggaaaaggacgacactaagatgaacgtatatttcaacccgct
cggtggccgtccggtatgtctctcgttatactctgatgtcacttatcaagttgccgatca
aaaacctgccaacttccgattagtggattactacgatccggaggagcagctcaaaatgac
atacgccgccaagcaaacacgatcgctgcaagagaaatgtggggaagactgttggccacc
gatttccccatcactgcctccatttgacgagtcgacagtaacaggcacgtcctctggttt
tggtgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGGTGTGGTCTTCGCTCAGTTG 686 141 3951 Antisense
GTTATTCTTACTACAGGGACTCTTT 480 447 3977 Antisense
TGAATGACGATGCTCCGTTCTTCTG 701 573 4001 Antisense
GTTCTTCTGCTCCCAGGAGATCAAG 405 443 4017 Antisense
AGAGCTGGAAATCGACTGCAATTGG 254 69 4048 Antisense
TATACCCGTCCTGGAAAGTCTAACA 479 657 4087 Antisense
GAAAGTCTAACATGGCTCTAGCCGA 174 361 4100 Antisense
GCTCTAGCCGAAATTGATGCCTTGA 423 299 4114 Antisense
GATGCCTTGAGTGGTTACCGATTCG 634 413 4129 Antisense
GCGGAACAGGTGCATACTTTGACAA 168 293 4156 Antisense
GGCACGTCCTCTGGTTTTGGTGCCA 407 535 4474 Antisense
Sequence Source Affymetrix Proprietary Database