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[193132_at] fatty acid-binding protein

Description F40F4.2 /REP_DB=WormBase Gene ID /WP=CE04532 /GEN=lbp-2 /TR=SW:Q20224 /GB=AAA81435.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=fatty acid-binding protein
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 51      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 16      6grp_total > 52      4grp_total > 60      6grp_highest_sub > 03      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3643
1 2 3 4 range
A 4706
(3)
P 		3893.2
(1.1)
P 		4601.3
(2.8)
P 		2157.4
(-3)
P 		2549
B 4412
(0.8)
P 		5590.7
(3)
P 		5355
(2.6)
P 		2409.9
(-3)
P 		3181
C 5232.3
(2)
P 		5800.8
(3)
P 		5192.6
(1.9)
P 		2505.3
(-3)
P 		3296
avr 4783.4
(2.3) 		5094.9
(3) 		5049.6
(2.9) 		2357.5
(-3) 		2737

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7352
1 2 3 4 5 6 range
A 4897.5
(-2.4)
P 		7654.9
(0.1)
P 		10890.5
(3)
P 		8622.9
(1)
P 		5195.3
(-2.1)
P 		4187.9
(-3)
P 		6703
B 6262
(-0.3)
P 		6798.6
(0.2)
P 		9702.7
(3)
P 		7165.5
(0.5)
P 		5735.5
(-0.9)
P 		3538.9
(-3)
P 		6164
C 6949.1
(0.7)
P 		6782.4
(0.5)
P 		8589.5
(3)
P 		7114.9
(0.9)
P 		6627.2
(0.3)
P 		4282.2
(-3)
P 		4307
avr 6036.2
(-0.9) 		7078.6
(0.2) 		9727.6
(3) 		7634.4
(0.8) 		5852.7
(-1.1) 		4003
(-3) 		5725
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1494
1 2 3 4 range
A 1713.5
(3)
P 		845.1
(-0.7)
P 		1202.9
(0.8)
P 		315.8
(-3)
P 		1398
B 1407
(3)
P 		1380.8
(2.8)
P 		1240.9
(1.9)
P 		513.6
(-3)
P 		893
C 1732
(2.7)
P 		1667.8
(2.4)
P 		1809.8
(3)
P 		422.4
(-3)
P 		1387
avr 1617.5
(3) 		1297.9
(1.4) 		1417.9
(2) 		417.3
(-3) 		1200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1820
1 2 3 4 5 6 range
A 902.8
(-3)
P 		2722.5
(3)
P 		2371.7
(1.8)
P 		2187
(1.2)
P 		1567.7
(-0.8)
P 		1019.6
(-2.6)
P 		1820
B 2178.9
(2)
P 		2263
(2.5)
P 		2356.1
(3)
P 		1897.9
(0.3)
P 		2330.3
(2.9)
P 		1319.6
(-3)
P 		1037
C 2575.7
(3)
P 		2069.5
(0.3)
P 		2186.2
(1)
P 		1430.8
(-3)
P 		2144.5
(0.7)
P 		1433.5
(-3)
P 		1145
avr 1885.8
(0.4) 		2351.7
(3) 		2304.7
(2.7) 		1838.6
(0.2) 		2014.2
(1.1) 		1257.6
(-3) 		1094
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193132_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18235
Sequence Type Exemplar sequence
Representative Public ID F40F4.2 NCBI
Target Description F40F4.2 /REP_DB=WormBase Gene ID /WP=CE04532 /GEN=lbp-2 /TR=SW:Q20224 /GB=AAA81435.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=fatty acid-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076157(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076157 NCBI Caenorhabditis elegans Lipid Binding Protein family member (lbp-2) (lbp-2) mRNA, complete cds. 11/11 None
SNAP00000025268 ENSEMBL cdna:SNAP chromosome:CEL140:X:3260791:3261378:1 11/11 None
GENEFINDER00000025278 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3260791:3261378:1 11/11 None
F40F4.2 ENSEMBL cdna:known chromosome:CEL140:X:3260597:3261903:1 gene:F40F4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3260791-3261379(+) 100.0 100.0
Public Domain and Genome References
Gene Title fatty acid-binding protein
Gene Symbol lbp-2
Ensembl F40F4.2
Entrez Gene 180617 Entrez gene
SwissProt Q20224 EMBL-EBI
WormBase CE04532 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81435 Lipid binding protein protein 2 [Caenorhabditis elegans] ref|NP_508558.1| Lipid Binding Protein family member (lbp-2) [Caenorhabditis elegans] sp|Q20224|FABP2_CAEEL Fatty acid-binding protein homolog 2 precursor (Lipid binding protein 2) 2.0E-70
blast AAA81434 Lipid binding protein protein 1 [Caenorhabditis elegans] ref|NP_508557.1| Lipid Binding Protein family member (lbp-1) [Caenorhabditis elegans] sp|Q20223|FABP1_CAEEL Fatty acid-binding protein homolog 1 precursor (Lipid binding protein 1) 1.0E-53
blast CAE68399 Hypothetical protein CBG14168 [Caenorhabditis briggsae] 2.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR000566 EMBL-EBI Lipocalin-related protein and Bos/Can/Equ allergen 0.0071
Sequence
Target Sequence 
>C. ELEGANS:193132_AT
atgtcttcgaaattcctcatcttactcgcattttgtggagctacccttgtggctgccgaa
cagcttccagaaaagttctatggaaccttcgacttggatcactctgaaaattttgatgag
tacctcactgccaaaggatacggatggttcactcgaaagcttgtaacctttgcgacattc
aagaaggtttttgccaagaatgctaacaaaaacctcttcgactactccaacttgacatcg
aaaaaagatgtgttctacaaaaacgtccagatcggaagcaagttcgaaggagagggtctt
gataacaccaagcacgaggttaccttcactctcaaggacggacacttgttcgaacatcac
aagccacttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTTCGAAATTCCTCATCTTAC 316 49 13 Antisense
TCCTCATCTTACTCGCATTTTGTGG 322 593 26 Antisense
CATTTTGTGGAGCTACCCTTGTGGC 257 17 41 Antisense
TTGTGGCTGCCGAACAGCTTCCAGA 424 709 59 Antisense
ATGGAACCTTCGACTTGGATCACTC 187 53 92 Antisense
CGGATGGTTCACTCGAAAGCTTGTA 643 241 153 Antisense
AAGCTTGTAACCTTTGCGACATTCA 515 149 169 Antisense
AACACCAAGCACGAGGTTACCTTCA 59 135 316 Antisense
GTTACCTTCACTCTCAAGGACGGAC 368 423 331 Antisense
AAGGACGGACACTTGTTCGAACATC 710 157 346 Antisense
GTTCGAACATCACAAGCCACTTGAA 675 439 360 Antisense
Sequence Source Affymetrix Proprietary Database