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[193130_at]

Description ZK39.6 /REP_DB=WormBase Gene ID /WP=CE19317 /TR=Q9XUI4 /GB=CAB05016.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 93      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 51.9
(-3)
A 		105.9
(3)
P 		55.6
(-2.6)
A 		56.8
(-2.5)
A 		54
B 58.9
(-0.5)
A 		77.9
(2.5)
A 		80.8
(3)
M 		43.1
(-3)
A 		38
C 26.2
(-3)
A 		56.1
(-0.8)
P 		26.6
(-3)
A 		107.9
(3)
P 		82
avr 45.7
(-3) 		80
(3) 		54.3
(-1.5) 		69.3
(1.1) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 77.3
(3)
M 		34
(-1.4)
A 		17.6
(-3)
A 		36.2
(-1.1)
A 		69.1
(2.2)
M 		45.4
(-0.2)
A 		60
B 44.1
(0.5)
A 		26.4
(-3)
A 		33.7
(-1.5)
A 		56.5
(3)
A 		43.5
(0.4)
A 		46.4
(1)
M 		30
C 17.7
(-3)
A 		58.7
(2.9)
A 		59.3
(3)
A 		34.6
(-0.6)
A 		50.6
(1.7)
A 		36.1
(-0.3)
A 		42
avr 46.4
(0.3) 		39.7
(-2) 		36.9
(-3) 		42.4
(-1.1) 		54.4
(3) 		42.6
(-1) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 18.9
(1.3)
A 		23
(3)
P 		14.5
(-0.5)
A 		8.3
(-3)
A 		15
B 18.8
(2.8)
A 		19.2
(3)
A 		18.7
(2.7)
M 		9.2
(-3)
A 		10
C 8.7
(-3)
A 		16.1
(1.7)
P 		9.3
(-2.6)
A 		18.2
(3)
P 		10
avr 15.5
(-0.1) 		19.4
(3) 		14.2
(-1.2) 		11.9
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 14.2
(0.6)
M 		12.1
(-0.1)
A 		3.8
(-3)
A 		9.2
(-1.1)
A 		20.9
(3)
M 		11
(-0.5)
A 		17
B 15.4
(1.5)
A 		8.8
(-2.6)
A 		8.2
(-3)
A 		15
(1.3)
A 		17.7
(3)
A 		17.3
(2.7)
M 		10
C 6.5
(-3)
A 		17.9
(3)
A 		15.1
(1.5)
A 		7
(-2.7)
A 		16.4
(2.2)
A 		12.1
(-0.1)
A 		11
avr 12
(-1.1) 		12.9
(-0.5) 		9
(-3) 		10.4
(-2.1) 		18.3
(3) 		13.5
(-0.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193130_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.875
Sequence Type Exemplar sequence
Representative Public ID ZK39.6 NCBI
Target Description ZK39.6 /REP_DB=WormBase Gene ID /WP=CE19317 /TR=Q9XUI4 /GB=CAB05016.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060469(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060469 NCBI Caenorhabditis elegans ZK39.6 (ZK39.6) mRNA, complete cds. 11/11 None
SNAP00000035806 ENSEMBL cdna:SNAP chromosome:CEL140:I:11160795:11163628:1 10/11 None
GENEFINDER00000035818 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11160843:11162295:1 9/11 None
ZK39.6 ENSEMBL cdna:known chromosome:CEL140:I:11160843:11162386:1 gene:ZK39.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11160773-11162317(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK39.6
Entrez Gene 191214 Entrez gene
SwissProt Q9XUI4 EMBL-EBI
WormBase CE19317 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05016 Hypothetical protein ZK39.6 [Caenorhabditis elegans] ref|NP_492870.2| ZK39.6 [Caenorhabditis elegans] 1.0E-105
blast CAB05016 Hypothetical protein ZK39.6 [Caenorhabditis elegans] ref|NP_492870.2| ZK39.6 [Caenorhabditis elegans] 9.0E-89
blast CAB05016 Hypothetical protein ZK39.6 [Caenorhabditis elegans] ref|NP_492870.2| ZK39.6 [Caenorhabditis elegans] 1.0E-85
blast CAB05015 Hypothetical protein ZK39.5 [Caenorhabditis elegans] ref|NP_492869.1| ZK39.5 [Caenorhabditis elegans] 2.0E-60
blast CAB05015 Hypothetical protein ZK39.5 [Caenorhabditis elegans] ref|NP_492869.1| ZK39.5 [Caenorhabditis elegans] 1.0E-49
blast CAB05015 Hypothetical protein ZK39.5 [Caenorhabditis elegans] ref|NP_492869.1| ZK39.5 [Caenorhabditis elegans] 1.0E-46
blast CAB05018 Hypothetical protein ZK39.2 [Caenorhabditis elegans] ref|NP_492868.1| ZK39.2 [Caenorhabditis elegans] 6.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000035806 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:193130_AT
tcttggtgttgccactgtgacttcgcagacttgcgatactggatggcaactattcagtcg
gccttctggagaatggtgtgtcaaggcattcgcaggagcttacactcaacctctagctca
agcacagtgtatttctgctggggcgatactttcaggagttcagggacacaatgaagctgc
tgctttttcgaaccttggccttacatcccttggtaatcaatctggatcattttggatcgg
agcccatagaatcactacttgtatgacacaaatcatcaccgctcaatgcacaccaaccaa
ctctttctcctggaccgacaactctgcaactagaaccgatggtttcgtctgggaaactca
acaaccagacaactcggatttcaactcatcatgtgcagtaattctcgcagcgaatgttcc
agttatggcggcgcaacgttggtggtcgccgagcaagttagacgatcatgtgtgcggtta
tgttgatgaggatgtttctaacccgagacgtgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGGTGTTGCCACTGTGACTTCG 229 619 45 Antisense
GATGGCAACTATTCAGTCGGCCTTC 434 407 86 Antisense
TTCGCAGGAGCTTACACTCAACCTC 392 695 133 Antisense
ACTCAACCTCTAGCTCAAGCACAGT 166 101 148 Antisense
TATTTCTGCTGGGGCGATACTTTCA 106 663 174 Antisense
TGAAGCTGCTGCTTTTTCGAACCTT 63 575 216 Antisense
TGGCCTTACATCCCTTGGTAATCAA 512 543 240 Antisense
GACCGACAACTCTGCAACTAGAACC 562 381 357 Antisense
ATGTTCCAGTTATGGCGGCGCAACG 499 45 458 Antisense
AACGTTGGTGGTCGCCGAGCAAGTT 132 143 479 Antisense
GATGTTTCTAACCCGAGACGTGTTC 4 397 535 Antisense
Sequence Source Affymetrix Proprietary Database