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[193129_at] dolichol-phosphate mannosyltransferase

Description Y66H1A.2 /REP_DB=WormBase Gene ID /WP=CE22753 /TR=Q9TYJ7 /GB=AAD12857.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=dolichol-phosphate mannosyltransferase
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 42      6grp_total > 40      4grp_total > 60      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 514
1 2 3 4 range
A 531.3
(0.1)
P 		685.2
(3)
P 		648.3
(2.3)
P 		363.2
(-3)
P 		322
B 851.7
(3)
P 		699
(1)
P 		612.6
(-0.2)
P 		404.6
(-3)
P 		447
C 566.3
(0.6)
P 		570.4
(0.7)
P 		720.2
(3)
P 		337.7
(-3)
P 		383
avr 649.8
(2.8) 		651.5
(2.8) 		660.4
(3) 		368.5
(-3) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 833
1 2 3 4 5 6 range
A 672
(-1.6)
P 		730.6
(-1.1)
P 		1306.3
(3)
P 		863.1
(-0.2)
P 		498.3
(-2.8)
P 		473.1
(-3)
P 		833
B 644.6
(-1.2)
P 		823.3
(1.1)
P 		797.1
(0.8)
P 		973
(3)
P 		584.5
(-2)
P 		502.1
(-3)
P 		471
C 680.8
(-0.6)
P 		882.3
(3)
P 		829.3
(2.1)
P 		800.9
(1.6)
P 		544.7
(-3)
P 		594.5
(-2.1)
P 		338
avr 665.8
(-1.1) 		812.1
(0.8) 		977.6
(3) 		879
(1.7) 		542.5
(-2.7) 		523.2
(-3) 		454
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 193.4
(3)
P 		148.7
(1.1)
P 		169.5
(2)
P 		53.2
(-3)
P 		140
B 271.6
(3)
P 		172.6
(-0.2)
P 		142
(-1.2)
P 		86.2
(-3)
P 		185
C 187.4
(1)
P 		164
(0.3)
P 		251
(3)
P 		56.9
(-3)
P 		194
avr 217.5
(3) 		161.8
(0.8) 		187.5
(1.8) 		65.4
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 123.9
(-2.7)
P 		259.8
(2.1)
P 		284.5
(3)
P 		218.9
(0.7)
P 		150.4
(-1.8)
P 		115.2
(-3)
P 		169
B 224.3
(-0.4)
P 		274
(3)
P 		193.6
(-2.6)
P 		257.7
(1.9)
P 		237.5
(0.5)
P 		187.2
(-3)
P 		87
C 252.3
(2.1)
P 		269.2
(3)
P 		211.1
(-0.2)
P 		161.1
(-3)
P 		176.2
(-2.2)
P 		199
(-0.9)
P 		108
avr 200.2
(-1) 		267.7
(3) 		229.7
(0.7) 		212.6
(-0.3) 		188
(-1.8) 		167.1
(-3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193129_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10383
Sequence Type Exemplar sequence
Representative Public ID Y66H1A.2 NCBI
Target Description Y66H1A.2 /REP_DB=WormBase Gene ID /WP=CE22753 /TR=Q9TYJ7 /GB=AAD12857.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=dolichol-phosphate mannosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067530(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067530 NCBI Caenorhabditis elegans Y66H1A.2 (Y66H1A.2) mRNA, complete cds. 11/11 None
SNAP00000007352 ENSEMBL cdna:SNAP chromosome:CEL140:IV:445683:448246:1 10/11 None
GENEFINDER00000007355 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:445065:448227:1 11/11 None
Y66H1A.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:445675:448439:1 gene:Y66H1A.2 11/11 None
Y66H1A.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:445677:448439:1 gene:Y66H1A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:445667-448246(+) 100.0 100.0
Public Domain and Genome References
Gene Title dolichol-phosphate mannosyltransferase
Ensembl Y66H1A.2
Entrez Gene 176874 Entrez gene
SwissProt Q9TYJ7 EMBL-EBI
WormBase CE37731 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259542_AT dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative at
CANINE:1605040_S_AT similar to Dolichol-phosphate mannosyltransferase (Dolichol-phosphate mannose synthase) (Dolichyl-phosphate beta-D-mannosyltransferase) (Mannose-P-dolichol synthase) (MPD synthase) (DPM synthase) cfa
CANINE:1604592_AT similar to Dolichol-phosphate mannosyltransferase (Dolichol-phosphate mannose synthase) (Dolichyl-phosphate beta-D-mannosyltransferase) (Mannose-P-dolichol synthase) (MPD synthase) (DPM synthase) cfa
CANINE_2:CFA.1802.1.S1_AT similar to Dolichol-phosphate mannosyltransferase (Dolichol-phosphate mannose synthase) (Dolichyl-phosphate beta-D-mannosyltransferase) (Mannose-P-dolichol synthase) (MPD synthase) (DPM synthase) cfa
CANINE_2:CFA.1802.3.S1_AT similar to Dolichol-phosphate mannosyltransferase (Dolichol-phosphate mannose synthase) (Dolichyl-phosphate beta-D-mannosyltransferase) (Mannose-P-dolichol synthase) (MPD synthase) (DPM synthase) cfa
CANINE_2:CFA.1802.3.S1_S_AT similar to Dolichol-phosphate mannosyltransferase (Dolichol-phosphate mannose synthase) (Dolichyl-phosphate beta-D-mannosyltransferase) (Mannose-P-dolichol synthase) (MPD synthase) (DPM synthase) cfa
DROSOPHILA_2:1638217_AT dm
DROSGENOME1:142885_AT dm
CHICKEN:GGAAFFX.20248.1.S1_S_AT dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit gga
HG-FOCUS:202673_AT dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
HG-U133A:202673_AT dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
HG-U133_PLUS_2:202673_AT dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
HG-U133A_2:202673_AT dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
HUGENEFL:AF007875_AT dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
U133_X3P:G4503362_3P_AT dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
HG-U95AV2:34879_AT dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
HG-U133_PLUS_2:237213_AT Dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
HG-U133B:237213_AT Dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
HG-U95B:45007_AT Dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
HG-U95C:62363_AT Dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
HG-U95D:70500_AT Dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
HG-U95D:71627_AT Dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
HG-U95E:71829_R_AT Dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
HG-U95D:76999_AT Dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
U133_X3P:HS.126631.0.A1_3P_AT Dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit hs
MG-U74AV2:92828_AT dolichol-phosphate (beta-D) mannosyltransferase 1 mm
MG-U74BV2:164263_AT dolichol-phosphate (beta-D) mannosyltransferase 1 mm
MOE430A:1449438_AT dolichol-phosphate (beta-D) mannosyltransferase 1 mm
MOUSE430A_2:1449438_AT dolichol-phosphate (beta-D) mannosyltransferase 1 mm
MOUSE430_2:1449438_AT dolichol-phosphate (beta-D) mannosyltransferase 1 mm
MOE430A:1419353_AT dolichol-phosphate (beta-D) mannosyltransferase 1 mm
MOUSE430A_2:1419353_AT dolichol-phosphate (beta-D) mannosyltransferase 1 mm
MOUSE430_2:1419353_AT dolichol-phosphate (beta-D) mannosyltransferase 1 mm
MU19KSUBA:TC15865_AT Dolichol-phosphate (beta-D) mannosyltransferase 1 (Dpm1), mRNA mm
MU19KSUBA:TC15865_G_AT Dolichol-phosphate (beta-D) mannosyltransferase 1 (Dpm1), mRNA mm
RAE230A:1377593_AT dolichol-phosphate (beta-D) mannosyltransferase 1 (predicted) rn
RAT230_2:1377593_AT dolichol-phosphate (beta-D) mannosyltransferase 1 (predicted) rn
RAE230B:1381917_AT dolichol-phosphate (beta-D) mannosyltransferase 1 (predicted) rn
RAT230_2:1381917_AT dolichol-phosphate (beta-D) mannosyltransferase 1 (predicted) rn
RAE230B:1382523_AT dolichol-phosphate (beta-D) mannosyltransferase 1 (predicted) rn
RAT230_2:1382523_AT dolichol-phosphate (beta-D) mannosyltransferase 1 (predicted) rn
RAE230A:1386111_AT Dolichol-phosphate (beta-D) mannosyltransferase 1 (predicted) rn
RAT230_2:1386111_AT Dolichol-phosphate (beta-D) mannosyltransferase 1 (predicted) rn
RAE230B:1391372_AT Dolichol-phosphate (beta-D) mannosyltransferase 1 (predicted) rn
RAT230_2:1391372_AT Dolichol-phosphate (beta-D) mannosyltransferase 1 (predicted) rn
RG-U34B:RC_AA998619_AT Dolichol-phosphate (beta-D) mannosyltransferase 1 (predicted) rn
RG-U34C:RC_AI180082_AT Dolichol-phosphate (beta-D) mannosyltransferase 1 (predicted) rn
RG-U34C:RC_AI235896_AT Dolichol-phosphate (beta-D) mannosyltransferase 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAD12857 Hypothetical protein Y66H1A.2 [Caenorhabditis elegans] ref|NP_499931.2| Y66H1A.2 [Caenorhabditis elegans] 1.0E-135
blast AAD12857 Hypothetical protein Y66H1A.2 [Caenorhabditis elegans] ref|NP_499931.2| Y66H1A.2 [Caenorhabditis elegans] 1.0E-131
blast AAC98796 dolichol monophosphate mannose synthase [Caenorhabditis briggsae] 1.0E-124
blast CAE67900 Hypothetical protein CBG13497 [Caenorhabditis briggsae] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 2.7E-39
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 2.7E-39
Sequence
Target Sequence 
>C. ELEGANS:193129_AT
tatcgttgacgatgcatcaccagacggtactcaaggcattgcaaaacttcttcaaaagga
gtacggagacgataagattctgatcaagccacgagttggaaaacttggacttggtacagc
ctattcacatggattatcgtttgcacgtggagaatttatcattcttatggacgcagatct
ttctcatcatccaaaattcattccggaaatgattgcgcttcaacataagtataagctcga
catcgtgacaggaacacgctacaaggacggaggtggtgttagtggatgggatttgaagag
gaagacgatcagcaagggagccaattttttggctcagtttctgctgaatccaggtgtatc
tgatttaacaggatcatttcgtctttataagagagatattctgtcgaagttgattgctga
aagtgtaagcaaaggatacgtttttcagatggaaatgatgtttcgagcgaaaaaatcggg
ttatcgtattggggaggtaccaatctcattcgtcgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCGTTGACGATGCATCACCAGAC 267 653 144 Antisense
CACCAGACGGTACTCAAGGCATTGC 321 201 161 Antisense
GATTCTGATCAAGCCACGAGTTGGA 225 431 219 Antisense
TGGACTTGGTACAGCCTATTCACAT 593 547 249 Antisense
TATGGACGCAGATCTTTCTCATCAT 584 655 309 Antisense
TTCTCATCATCCAAAATTCATTCCG 195 693 324 Antisense
ATTCCGGAAATGATTGCGCTTCAAC 200 9 343 Antisense
CAATTTTTTGGCTCAGTTTCTGCTG 90 179 465 Antisense
GTTTCTGCTGAATCCAGGTGTATCT 4 451 480 Antisense
AACAGGATCATTTCGTCTTTATAAG 166 137 510 Antisense
GAGGTACCAATCTCATTCGTCGATC 675 401 637 Antisense
Sequence Source Affymetrix Proprietary Database