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[193126_s_at] Yeast hypothetical protein YEY6 like

Description K08H10.8 /REP_DB=WormBase Gene ID /WP=CE18880 /TR=SW:O17606 /GB=CAB05549.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YEY6 like
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 86      4grp_highest_8_8 > 19      4grp_high_8_8 > 47      6grp_highest_nonorm > 84      6grp_total > 76      4grp_total > 40      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 640.3
(-3)
P 		793.2
(-0.3)
P 		982.6
(3)
P 		801.4
(-0.2)
P 		342
B 651.4
(-3)
P 		852.3
(0.5)
P 		994.3
(3)
P 		769.7
(-0.9)
P 		343
C 760.3
(-1.9)
P 		786.1
(-1.3)
P 		975.9
(3)
P 		713.6
(-3)
P 		262
avr 684
(-3) 		810.5
(-0.5) 		984.3
(3) 		761.6
(-1.4) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 529
1 2 3 4 5 6 range
A 525.2
(-3)
P 		524.7
(-3)
P 		586.7
(-2.2)
P 		666.3
(-1.2)
P 		641.4
(-1.5)
P 		990.5
(3)
P 		466
B 492.8
(-2.4)
P 		461.4
(-3)
P 		686.3
(1.5)
P 		628.1
(0.4)
P 		662.1
(1)
P 		759.9
(3)
P 		299
C 586.4
(-1.4)
P 		466.4
(-3)
P 		626.1
(-0.9)
P 		624.6
(-0.9)
P 		597.1
(-1.3)
P 		921.3
(3)
P 		455
avr 534.8
(-2.3) 		484.2
(-3) 		633
(-0.8) 		639.7
(-0.7) 		633.5
(-0.8) 		890.6
(3) 		406
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 233.1
(2)
P 		172.2
(-0.6)
P 		256.9
(3)
P 		117.3
(-3)
P 		140
B 207.7
(0.9)
P 		210.5
(1.2)
P 		230.4
(3)
P 		164
(-3)
P 		66
C 251.7
(0.6)
P 		226
(-0.1)
P 		340.1
(3)
P 		120.3
(-3)
P 		220
avr 230.8
(1.1) 		202.9
(-0.1) 		275.8
(3) 		133.9
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 96.8
(-3)
P 		186.6
(0.7)
P 		127.8
(-1.7)
P 		169
(0)
P 		193.6
(1)
P 		241.2
(3)
P 		144
B 171.5
(-2.2)
P 		153.6
(-3)
P 		166.6
(-2.4)
P 		166.4
(-2.4)
P 		269
(2.3)
P 		283.4
(3)
P 		130
C 217.4
(0)
P 		142.3
(-2.5)
P 		159.4
(-1.9)
P 		125.6
(-3)
P 		193.2
(-0.8)
P 		308.4
(3)
P 		183
avr 161.9
(-2.5) 		160.8
(-2.5) 		151.3
(-3) 		153.7
(-2.9) 		218.6
(0.2) 		277.7
(3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193126_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12151
Sequence Type Exemplar sequence
Representative Public ID K08H10.8 NCBI
Target Description K08H10.8 /REP_DB=WormBase Gene ID /WP=CE18880 /TR=SW:O17606 /GB=CAB05549.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YEY6 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171524 NCBI Caenorhabditis elegans C27H6.8 (C27H6.8) mRNA, complete cds. 11/11 A 
C27H6.8.1 ENSEMBL cdna:known chromosome:CEL140:V:9989003:9990370:-1 gene:C27H6.8 11/11 None
C27H6.8.2 ENSEMBL cdna:known chromosome:CEL140:V:9989005:9990372:-1 gene:C27H6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005146 3/11 Cross Hyb Matching Probes None
GENEFINDER00000005161 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9989118-9990334(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical protein YEY6 like
Ensembl C27H6.8
Entrez Gene 179392 Entrez gene
SwissProt O17606 EMBL-EBI
WormBase CE18880 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249238_AT expressed protein at
CANINE:1591927_AT similar to MYG1 protein cfa
CANINE:1584014_AT similar to MYG1 protein cfa
CANINE_2:CFA.7402.1.A1_S_AT similar to MYG1 protein cfa
DROSOPHILA_2:1637597_A_AT dm
DROSGENOME1:155085_AT dm
CHICKEN:GGA.9074.2.S1_S_AT similar to MYG1 protein gga
CHICKEN:GGAAFFX.20499.1.S1_AT similar to MYG1 protein gga
CHICKEN:GGAAFFX.20499.1.S1_S_AT similar to MYG1 protein gga
HU35KSUBA:RC_AA401345_S_AT chromosome 12 open reading frame 10 hs
HU35KSUBD:RC_N50809_AT chromosome 12 open reading frame 10 hs
HG-U133A:218220_AT chromosome 12 open reading frame 10 hs
HG-U133_PLUS_2:218220_AT chromosome 12 open reading frame 10 hs
HG-FOCUS:218220_AT chromosome 12 open reading frame 10 hs
HG-U133A_2:218220_AT chromosome 12 open reading frame 10 hs
U133_X3P:G11056017_3P_AT chromosome 12 open reading frame 10 hs
HG-U95B:53911_AT chromosome 12 open reading frame 10 hs
HG-U95D:85648_AT chromosome 12 open reading frame 10 hs
MG-U74AV2:95651_AT melanocyte proliferating gene 1 mm
MOE430A:1424088_AT melanocyte proliferating gene 1 mm
MOUSE430A_2:1424088_AT melanocyte proliferating gene 1 mm
MOUSE430_2:1424088_AT melanocyte proliferating gene 1 mm
MOE430B:1430729_AT melanocyte proliferating gene 1 mm
MOUSE430_2:1430729_AT melanocyte proliferating gene 1 mm
MU19KSUBA:TC19890_AT Melanocyte proliferating gene 1, mRNA (cDNA clone MGC:41079 IMAGE:5256915) mm
MU19KSUBA:TC19890_G_AT Melanocyte proliferating gene 1, mRNA (cDNA clone MGC:41079 IMAGE:5256915) mm
MU19KSUBA:TC19891_AT Melanocyte proliferating gene 1, mRNA (cDNA clone MGC:41079 IMAGE:5256915) mm
MU19KSUBA:TC19891_G_AT Melanocyte proliferating gene 1, mRNA (cDNA clone MGC:41079 IMAGE:5256915) mm
MU19KSUBC:TC38329_AT Melanocyte proliferating gene 1, mRNA (cDNA clone MGC:41079 IMAGE:5256915) mm
RG-U34C:RC_AA818018_AT MYG1 protein rn
RAE230A:1388434_AT MYG1 protein rn
RAT230_2:1388434_AT MYG1 protein rn
RAE230B:1391191_AT MYG1 protein rn
RAT230_2:1391191_AT MYG1 protein rn
RG-U34B:RC_AI059659_AT MYG1 protein rn
Protein Similarities
Method ID Description E-Value
blast CAB02797 Hypothetical protein C27H6.8 [Caenorhabditis elegans] emb|CAB05549.1| Hypothetical protein C27H6.8 [Caenorhabditis elegans] ref|NP_741610.1| C27H6.8 [Caenorhabditis elegans] sp|O17606|YK4P_CAEEL Hypothetical UPF0160 protein C27H6.8 in chromosome V 0.0
blast CAE72295 Hypothetical protein CBG19425 [Caenorhabditis briggsae] 0.0
blast CAG07081 unnamed protein product [Tetraodon nigroviridis] 1.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR003226 EMBL-EBI Metal-dependent protein hydrolase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193126_S_AT
taacgggatttctcaatacgacggagttccaagatatcattcatcaggaaatctttcatc
gcgtactggtcaattcaattcccattggaatgaacctgagaatgatgctgatgaacgatt
ccaacaagcaatgcaattcatcggtgaagagttttcacgatcagtgaagtacttggcaaa
tgtttggtggccagctagagagatcatcgaagctgctgtggataaacgatttgaaattga
tgcatctggaaggatcattcttatcgagaacggtggatgcccgtggaaagaacacttttt
cgacattgaagtagagaagaatattgccgacgataatatcacttacattctgttctcgga
ttctaccaatgcttcgtggcgcgttcaagcaatcccagtcgacaaaatgtcatcattcga
gaatcgcatgccacttccagctgcttggcgtggtctccgtgatgacgatctttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACGGGATTTCTCAATACGACGGA 111 639 411 Antisense
GACGGAGTTCCAAGATATCATTCAT 348 377 430 Antisense
AATCTTTCATCGCGTACTGGTCAAT 644 167 460 Antisense
GAGAGATCATCGAAGCTGCTGTGGA 370 395 608 Antisense
GGTGGATGCCCGTGGAAAGAACACT 371 499 682 Antisense
CTTACATTCTGTTCTCGGATTCTAC 409 221 752 Antisense
CGGATTCTACCAATGCTTCGTGGCG 82 245 767 Antisense
AATGCTTCGTGGCGCGTTCAAGCAA 381 165 778 Antisense
GTTCAAGCAATCCCAGTCGACAAAA 193 443 793 Antisense
CATTCGAGAATCGCATGCCACTTCC 175 217 824 Antisense
GTGGTCTCCGTGATGACGATCTTTC 490 489 860 Antisense
Sequence Source Affymetrix Proprietary Database