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[193123_s_at] Protein phosphatase-1 (PP1) (2 domains)

Description F58G1.3 /REP_DB=WormBase Gene ID /WP=CE17923 /TR=O62272 /GB=CAB04521.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Protein phosphatase-1 (PP1) (2 domains)
Cluster 6grp_total > 98      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.5
(-3)
A 		6.3
(-1.5)
A 		5.8
(-1.9)
A 		11.7
(3)
A 		7
B 2.4
(-3)
A 		13
(3)
A 		5.7
(-1.1)
A 		8.3
(0.3)
A 		11
C 5.3
(-2.5)
A 		11.5
(1)
A 		4.5
(-3)
A 		15
(3)
A 		11
avr 4.1
(-3) 		10.3
(1.9) 		5.3
(-2.1) 		11.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 5.3
(-2.9)
A 		6.3
(-2.9)
A 		3.5
(-3)
A 		7.3
(-2.9)
A 		85.8
(-0.1)
A 		172
(3)
A 		169
B 2.9
(-3)
A 		6.1
(-2.9)
A 		3.9
(-3)
A 		9.2
(-2.7)
A 		108.8
(1.7)
A 		138.2
(3)
P 		135
C 4.5
(-3)
A 		3.9
(-3)
A 		4.4
(-3)
A 		13
(-2.6)
A 		106.7
(2)
A 		128
(3)
P 		124
avr 4.2
(-3) 		5.4
(-2.9) 		3.9
(-3) 		9.8
(-2.8) 		100.4
(1.1) 		146.1
(3) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.6
(1)
A 		1.4
(-3)
A 		1.5
(-1)
A 		1.7
(3)
A 		0
B 0.8
(-3)
A 		3.2
(3)
A 		1.3
(-1.8)
A 		1.8
(-0.5)
A 		2
C 1.8
(-2.3)
A 		3.3
(3)
A 		1.6
(-3)
A 		2.5
(0.2)
A 		2
avr 1.4
(-3) 		2.6
(3) 		1.5
(-2.5) 		2
(0) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 1
(-3)
A 		2.2
(-2.8)
A 		0.8
(-3)
A 		1.9
(-2.8)
A 		25.9
(0.7)
A 		41.9
(3)
A 		41
B 1
(-3)
A 		2
(-2.9)
A 		1
(-3)
A 		2.4
(-2.8)
A 		44.2
(2.1)
A 		51.6
(3)
P 		51
C 1.7
(-2.9)
A 		1.2
(-3)
A 		1.1
(-3)
A 		2.6
(-2.8)
A 		34.5
(1.8)
A 		42.8
(3)
P 		42
avr 1.2
(-3) 		1.8
(-2.9) 		1
(-3) 		2.3
(-2.8) 		34.9
(1.6) 		45.4
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193123_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3472
Sequence Type Exemplar sequence
Representative Public ID F58G1.3 NCBI
Target Description F58G1.3 /REP_DB=WormBase Gene ID /WP=CE17923 /TR=O62272 /GB=CAB04521.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Protein phosphatase-1 (PP1) (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064353 NCBI Caenorhabditis elegans F58G1.3 (F58G1.3) mRNA, complete cds. 11/11 None
SNAP00000003689 ENSEMBL cdna:SNAP chromosome:CEL140:II:12925933:12932838:-1 11/11 None
GENEFINDER00000003697 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12925933:12928157:-1 11/11 None
F58G1.3 ENSEMBL cdna:known chromosome:CEL140:II:12925933:12928181:-1 gene:F58G1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10572221-10573923(+) 92.11 92.11
chrII:12925929-12928154(-) 100.0 100.0
Public Domain and Genome References
Gene Title Protein phosphatase-1 (PP1) (2 domains)
Ensembl F58G1.3
Entrez Gene 174933 Entrez gene
SwissProt O62272 EMBL-EBI
WormBase CE35562 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04521 Hypothetical protein F58G1.3 [Caenorhabditis elegans] ref|NP_496754.2| F58G1.3 [Caenorhabditis elegans] 0.0
blast CAA90052 Hypothetical protein C06A1.3 [Caenorhabditis elegans] ref|NP_496276.1| C06A1.3 [Caenorhabditis elegans] sp|P48458|YT91_CAEEL Putative serine/threonine protein phosphatase C06A1.3 in chromosome II 0.0
blast CAE57467 Hypothetical protein CBG00433 [Caenorhabditis briggsae] 0.0
blast CAE57467 Hypothetical protein CBG00433 [Caenorhabditis briggsae] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.9E-39
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.9E-39
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.9E-39
Sequence
Target Sequence 
>C. ELEGANS:193123_S_AT
tcgcatctacttgctgcgtggcaaccacgaaacgccgtcggtcaacaagatctatggatt
ctacgtggagtgtcagtacaagtacggagtcggattgtggtgggacttccagacatgctt
caatcgtatgccaatgtctggattgatctcgaagagagtgctctgtatgcacggtggact
ctcgccggagctcatcaatcttgatacgatcaggaatattccacgtccgtgtgagccgct
ggatcgtggaatcagctacatgtttggcaaaggagtcgtcgagcaagcgtgtaaatcgct
ggagattgatctgatcattcgtggccatcaagtcgtccaagatggatacgaaatgatggc
tggacgccgtctgatcaccgtcttctcggtgccaaactactgtgcccagttcaccaacgc
cgccgcagtggtttgcctgaacgccaacttgcaggtctcgttccaacagctgatcccacc
accacttccggatggcaccaaggccaaggcagctccagcgattgcaatcgacacgaatat
tgaggcggctcgtgctgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCATCTACTTGCTGCGTGGCAAC 120 601 447 Antisense
CCACGAAACGCCGTCGGTCAACAAG 547 261 471 Antisense
GGATTCTACGTGGAGTGTCAGTACA 250 509 502 Antisense
GACTTCCAGACATGCTTCAATCGTA 105 371 550 Antisense
GCTTCAATCGTATGCCAATGTCTGG 86 305 563 Antisense
GGAGTCGTCGAGCAAGCGTGTAAAT 613 515 718 Antisense
TCATTCGTGGCCATCAAGTCGTCCA 427 619 761 Antisense
TCACCGTCTTCTCGGTGCCAAACTA 257 625 821 Antisense
GAACGCCAACTTGCAGGTCTCGTTC 341 345 885 Antisense
CAGCTCCAGCGATTGCAATCGACAC 470 203 956 Antisense
GAATATTGAGGCGGCTCGTGCTGAC 72 327 981 Antisense
Sequence Source Affymetrix Proprietary Database