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[193117_at] Lectin C-type domain short and long forms

Description ZK39.5 /REP_DB=WormBase Gene ID /WP=CE19316 /TR=Q9XUI5 /GB=CAB05015.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 43      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 9.3
(-2.7)
A 		5.4
(-3)
A 		5.6
(-3)
A 		91.7
(3)
A 		86
B 4.6
(-3)
A 		74.3
(3)
A 		6.6
(-2.8)
A 		7.2
(-2.8)
A 		70
C 26.2
(-0.7)
A 		48.1
(1.7)
A 		4.6
(-3)
A 		60.2
(3)
A 		56
avr 13.4
(-2) 		42.6
(1.7) 		5.6
(-3) 		53
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 33.3
(0.7)
A 		18.7
(-1.3)
A 		50.4
(3)
A 		5.8
(-3)
A 		21
(-1)
A 		8.4
(-2.7)
A 		45
B 49.9
(2.8)
A 		40.6
(1.6)
A 		51.3
(3)
A 		5.6
(-3)
A 		36.2
(1)
A 		5.3
(-3)
A 		46
C 3.5
(-3)
A 		45.2
(3)
A 		12.9
(-1.6)
A 		28.9
(0.7)
A 		42.1
(2.6)
A 		6
(-2.6)
A 		42
avr 28.9
(1.2) 		34.8
(2.4) 		38.2
(3) 		13.4
(-1.7) 		33.1
(2) 		6.6
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.4
(-1.9)
A 		1.2
(-3)
A 		1.5
(-2.9)
A 		13.4
(3)
A 		12
B 1.5
(-3)
A 		18.3
(3)
A 		1.5
(-3)
A 		1.5
(-3)
A 		17
C 8.7
(0.5)
A 		13.8
(3)
A 		1.6
(-3)
A 		10.1
(1.2)
A 		12
avr 4.5
(-1.1) 		11.1
(3) 		1.5
(-3) 		8.3
(1.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6.1
(-0.1)
A 		6.6
(0.2)
A 		11
(3)
A 		1.5
(-3)
A 		6.3
(0)
A 		2
(-2.7)
A 		10
B 17.4
(3)
A 		13.5
(1.5)
A 		12.4
(1.1)
A 		1.5
(-3)
A 		14.7
(2)
A 		2
(-2.8)
A 		16
C 1.3
(-3)
A 		13.8
(3)
A 		3.3
(-2)
A 		5.8
(-0.8)
A 		13.6
(2.9)
A 		2
(-2.7)
A 		13
avr 8.3
(1) 		11.3
(2.9) 		8.9
(1.4) 		2.9
(-2.4) 		11.5
(3) 		2
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.768
Sequence Type Exemplar sequence
Representative Public ID ZK39.5 NCBI
Target Description ZK39.5 /REP_DB=WormBase Gene ID /WP=CE19316 /TR=Q9XUI5 /GB=CAB05015.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060468(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060468 NCBI Caenorhabditis elegans ZK39.5 (ZK39.5) mRNA, complete cds. 11/11 None
SNAP00000035805 ENSEMBL cdna:SNAP chromosome:CEL140:I:11159359:11160063:1 11/11 None
GENEFINDER00000035810 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11159359:11160616:1 10/11 None
ZK39.5 ENSEMBL cdna:known chromosome:CEL140:I:11159365:11160063:1 gene:ZK39.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11159295-11159994(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms
Ensembl ZK39.5
Entrez Gene 191213 Entrez gene
SwissProt Q9XUI5 EMBL-EBI
WormBase CE19316 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05015 Hypothetical protein ZK39.5 [Caenorhabditis elegans] ref|NP_492869.1| ZK39.5 [Caenorhabditis elegans] 1.0E-89
blast CAB05015 Hypothetical protein ZK39.5 [Caenorhabditis elegans] ref|NP_492869.1| ZK39.5 [Caenorhabditis elegans] 2.0E-73
blast CAB05016 Hypothetical protein ZK39.6 [Caenorhabditis elegans] ref|NP_492870.2| ZK39.6 [Caenorhabditis elegans] 1.0E-49
blast CAB05016 Hypothetical protein ZK39.6 [Caenorhabditis elegans] ref|NP_492870.2| ZK39.6 [Caenorhabditis elegans] 5.0E-39
blast CAB05018 Hypothetical protein ZK39.2 [Caenorhabditis elegans] ref|NP_492868.1| ZK39.2 [Caenorhabditis elegans] 4.0E-35
Sequence
Target Sequence 
>C. ELEGANS:193117_AT
gttacttctactagcagtttctctccttggcactgtcacttgtcagacgtgcgaaactgg
atggtctgtccaaggtttgcgcgcttctgggttctggtgtgtcaaagtattccttggaac
ttacactcaacctcaagcccaagctcagtgtgaagcagttggggcgactctctctggaat
tcaatccgcaaatgacgcacaagtgtttcaatctttgggactggcagctctaggtgggca
gtcaggatcattttggattggagcccgtagaagagctgcgtgtcagacacaacgcatcac
tgctgattgcactgcgcaaaattctttcgagtggactgatgacactgtaactggaactga
tggatttgtttggaacgataagcaacctgataactcggatctcaactcaggatgtgcagt
tttgctggcatcaggaccaccagtacagtggggaaatggcatgtgggccggagcgaaatt
agacgatcatgtttgcgacttcgttgataagacacccgcaaatccaagacgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTACTTCTACTAGCAGTTTCTCTC 236 447 15 Antisense
TCCTTGGCACTGTCACTTGTCAGAC 297 591 38 Antisense
TCCTTGGAACTTACACTCAACCTCA 631 591 125 Antisense
GGCGACTCTCTCTGGAATTCAATCC 345 541 177 Antisense
TCAATCTTTGGGACTGGCAGCTCTA 461 633 222 Antisense
CAGCTCTAGGTGGGCAGTCAGGATC 706 201 239 Antisense
GGAGCCCGTAGAAGAGCTGCGTGTC 365 521 274 Antisense
GACACAACGCATCACTGCTGATTGC 102 367 300 Antisense
GCAACCTGATAACTCGGATCTCAAC 158 321 396 Antisense
GCAGTTTTGCTGGCATCAGGACCAC 84 313 430 Antisense
AAGACACCCGCAAATCCAAGACGTA 578 151 523 Antisense
Sequence Source Affymetrix Proprietary Database