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[193116_at] Fibronectin type III domain (4 domains)

Description C34F6.10 /REP_DB=WormBase Gene ID /WP=CE15679 /TR=O17637 /GB=CAB03937.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Fibronectin type III domain (4 domains)
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 55      4grp_high_8_8 > 11      6grp_highest_nonorm > 70      6grp_total > 28      4grp_total > 21      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 318.6
(0.4)
P 		245.1
(-1.9)
P 		208.1
(-3)
P 		405.9
(3)
P 		198
B 341.6
(3)
P 		310.4
(1.7)
P 		195.7
(-3)
P 		317.3
(2)
P 		146
C 328
(0.5)
P 		223.5
(-3)
P 		248.4
(-2.2)
P 		403.4
(3)
P 		180
avr 329.4
(1.3) 		259.7
(-1.4) 		217.4
(-3) 		375.5
(3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 434.1
(3)
P 		333.6
(0.4)
P 		200.3
(-3)
P 		296.2
(-0.5)
P 		327.5
(0.3)
P 		349
(0.8)
P 		234
B 352.2
(2.8)
P 		357.5
(3)
P 		190.6
(-3)
P 		307.3
(1.2)
P 		291.2
(0.6)
P 		283.9
(0.4)
P 		167
C 461.2
(3)
P 		323.8
(-0.2)
P 		264.2
(-1.6)
P 		301
(-0.7)
P 		287.2
(-1.1)
P 		203.6
(-3)
P 		258
avr 415.8
(3) 		338.3
(0.6) 		218.4
(-3) 		301.5
(-0.5) 		302
(-0.5) 		278.8
(-1.2) 		197
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 116
(3)
P 		53.2
(-3)
P 		54.4
(-2.9)
P 		59.4
(-2.4)
P 		63
B 108.9
(3)
P 		76.7
(-0)
P 		45.3
(-3)
P 		67.6
(-0.9)
P 		64
C 108.6
(3)
P 		64.3
(-3)
P 		86.6
(0)
P 		68
(-2.5)
P 		44
avr 111.2
(3) 		64.7
(-2.7) 		62.1
(-3) 		65
(-2.6) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 80
(-0.1)
P 		118.7
(3)
P 		43.6
(-3)
P 		75.1
(-0.5)
P 		98.8
(1.4)
P 		85
(0.3)
P 		75
B 122.5
(3)
P 		119
(2.7)
P 		46.3
(-3)
P 		81.4
(-0.2)
P 		118.3
(2.7)
P 		105.9
(1.7)
P 		76
C 170.9
(3)
P 		98.8
(-0.9)
P 		67.3
(-2.6)
P 		60.5
(-3)
P 		92.9
(-1.2)
P 		68.2
(-2.6)
P 		110
avr 124.5
(3) 		112.2
(2) 		52.4
(-3) 		72.3
(-1.3) 		103.3
(1.2) 		86.4
(-0.2) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193116_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16692
Sequence Type Exemplar sequence
Representative Public ID C34F6.10 NCBI
Target Description C34F6.10 /REP_DB=WormBase Gene ID /WP=CE15679 /TR=O17637 /GB=CAB03937.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Fibronectin type III domain (4 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077476(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077476 NCBI Caenorhabditis elegans C34F6.10 (C34F6.10) mRNA, complete cds. 11/11 None
SNAP00000004409 ENSEMBL cdna:SNAP chromosome:CEL140:X:11229730:11233838:-1 10/11 None
C34F6.10 ENSEMBL cdna:known chromosome:CEL140:X:11229192:11233974:-1 gene:C34F6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11229729-11233838(-) 100.0 100.0
Public Domain and Genome References
Gene Title Fibronectin type III domain (4 domains)
Ensembl C34F6.10
Entrez Gene 181313 Entrez gene
SwissProt O17637 EMBL-EBI
WormBase CE15679 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03937 Hypothetical protein C34F6.10 [Caenorhabditis elegans] ref|NP_509877.1| C34F6.10 [Caenorhabditis elegans] 0.0
blast CAE70677 Hypothetical protein CBG17392 [Caenorhabditis briggsae] 1.0E-179
blast CAE70677 Hypothetical protein CBG17392 [Caenorhabditis briggsae] 1.0E-176
blast XP_228509 PREDICTED: similar to Gene model 784 [Rattus norvegicus] 1.0E-14
blast XP_787929 PREDICTED: similar to Fibronectin type-III domain containing protein 3a [Strongylocentrotus purpuratus] 2.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.1E-6
Pfam IPR003961 EMBL-EBI Fibronectin, type III 5.0E-8
Pfam IPR003961 EMBL-EBI Fibronectin, type III 8.4E-13
Pfam IPR003961 EMBL-EBI Fibronectin, type III 8.4E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509877.1 1 1067-1086
C34F6.10 1 1067-1086
Sequence
Target Sequence 
>C. ELEGANS:193116_AT
agctgcgagtttctgatcgagccactggggcttctacatggtccgagtcattctcattca
gcacaacaactgctccaccaccgcccttgaaaaaaagcccatcgactgcacttgtttccg
gccactcttacttgtaccgtattgaatgggaaaactgccttccagacagttcacaacatt
actacagacttcaaattgctgatgcgactgtaaagggagcaaagtggcaactgtgttacg
aaggaagaaatcacttctacgagttgaacaccgaaacatatcctggggctttacatgttc
gagtcatgtgcgtgcgcaaacatcttgaagaagaattgaaaggaagtccgagtccagttg
gctatattggaaatgttcctcctactatcgagtcggtaaagaacgaggaaattcatcaaa
aatctagattgcatcttttcacgacggatagagcatatgcgtattctctcttggttttgc
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGCGAGTTTCTGATCGAGCCAC 274 81 2756 Antisense
GAGCCACTGGGGCTTCTACATGGTC 423 385 2774 Antisense
TGGTCCGAGTCATTCTCATTCAGCA 157 553 2794 Antisense
AAAAAAAGCCCATCGACTGCACTTG 707 129 2845 Antisense
TGCCTTCCAGACAGTTCACAACATT 554 585 2911 Antisense
GAACACCGAAACATATCCTGGGGCT 434 351 3021 Antisense
TCCTGGGGCTTTACATGTTCGAGTC 543 593 3036 Antisense
TGTTCGAGTCATGTGCGTGCGCAAA 43 563 3051 Antisense
GGAAGTCCGAGTCCAGTTGGCTATA 678 531 3097 Antisense
GAAATGTTCCTCCTACTATCGAGTC 691 359 3125 Antisense
ATGCGTATTCTCTCTTGGTTTTGCT 16 43 3212 Antisense
Sequence Source Affymetrix Proprietary Database