[Home] | [Total List]

[193114_at] family 1 of G-protein coupled receptors

Description C48C5.1 /REP_DB=WormBase Gene ID /WP=CE04224 /TR=Q18701 /GB=AAB37017.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=family 1 of G-protein coupled receptors
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 90      6grp_total > 13      4grp_total > 47      6grp_highest_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 251.8
(3)
P 		81.1
(-3)
P 		124.4
(-1.5)
P 		113.3
(-1.9)
P 		171
B 265.5
(3)
P 		130.8
(-2.2)
P 		141.2
(-1.8)
P 		110.7
(-3)
P 		155
C 229.4
(3)
P 		159.6
(-1.4)
P 		134.9
(-3)
P 		212.8
(1.9)
P 		95
avr 248.9
(3) 		123.8
(-3) 		133.5
(-2.5) 		145.6
(-2) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 205.8
(3)
P 		144.1
(-0.5)
P 		149.9
(-0.2)
P 		137.9
(-0.8)
P 		159.4
(0.4)
P 		99.9
(-3)
P 		106
B 197
(2.7)
P 		202.6
(3)
P 		160.5
(0.7)
P 		147.7
(0)
P 		113.6
(-1.8)
P 		92
(-3)
P 		111
C 149.2
(-0.4)
P 		215.3
(3)
P 		129.9
(-1.3)
P 		180.9
(1.2)
P 		115.3
(-2.1)
P 		97.4
(-3)
P 		118
avr 184
(2.8) 		187.3
(3) 		146.8
(0.3) 		155.5
(0.9) 		129.4
(-0.8) 		96.4
(-3) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 91.7
(3)
P 		17.6
(-2.9)
P 		32.5
(-1.7)
P 		16.6
(-3)
P 		75
B 84.7
(3)
P 		32.3
(-2.1)
P 		32.7
(-2.1)
P 		23.6
(-3)
P 		61
C 75.9
(3)
P 		45.9
(-1.5)
P 		47
(-1.3)
P 		35.9
(-3)
P 		40
avr 84.1
(3) 		31.9
(-2.3) 		37.4
(-1.8) 		25.4
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 37.9
(0)
P 		51.3
(3)
P 		32.6
(-1.2)
P 		35
(-0.6)
P 		48.1
(2.3)
P 		24.3
(-3)
P 		27
B 68.5
(3)
P 		67.4
(2.8)
P 		39
(-2.2)
P 		39.1
(-2.2)
P 		46.2
(-0.9)
P 		34.3
(-3)
P 		34
C 55.3
(1.1)
P 		65.7
(3)
P 		33.1
(-2.9)
P 		36.4
(-2.3)
P 		37.3
(-2.1)
P 		32.6
(-3)
P 		33
avr 53.9
(1.5) 		61.5
(3) 		34.9
(-2.1) 		36.8
(-1.8) 		43.9
(-0.4) 		30.4
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193114_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16826
Sequence Type Exemplar sequence
Representative Public ID C48C5.1 NCBI
Target Description C48C5.1 /REP_DB=WormBase Gene ID /WP=CE04224 /TR=Q18701 /GB=AAB37017.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=family 1 of G-protein coupled receptors
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077114(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077114 NCBI Caenorhabditis elegans C48C5.1 (C48C5.1) mRNA, complete cds. 11/11 None
C48C5.1 ENSEMBL cdna:known chromosome:CEL140:X:8980912:8984287:1 gene:C48C5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028946 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8980910-8984286(+) 100.0 100.0
Public Domain and Genome References
Gene Title family 1 of G-protein coupled receptors
Ensembl C48C5.1
Entrez Gene 183574 Entrez gene
SwissProt Q18701 EMBL-EBI
WormBase CE04224 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.27263.1.S1_AT similar to neuromedin U receptor 2 cfa
DROSOPHILA_2:1635890_AT capa receptor dm
DROSGENOME1:149189_AT capa receptor dm
CHICKEN:GGAAFFX.2539.1.S1_AT similar to neuromedin U receptor 2 gga
CHICKEN:GGAAFFX.2539.2.S1_AT similar to neuromedin U receptor 2 gga
HG-U133_PLUS_2:224088_AT neuromedin U receptor 2 hs
HG-U133B:224088_AT neuromedin U receptor 2 hs
HU35KSUBD:RC_H11333_AT neuromedin U receptor 2 hs
U133_X3P:G10946202_3P_AT neuromedin U receptor 2 hs
HG-U95C:62747_AT neuromedin U receptor 2 hs
MOUSE430_2:1425943_AT neuromedin U receptor 2 mm
MOUSE430A_2:1425943_AT neuromedin U receptor 2 mm
MOE430A:1425943_AT neuromedin U receptor 2 mm
RAE230A:1387332_AT neuromedin U receptor 2 rn
RAT230_2:1387332_AT neuromedin U receptor 2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37017 Hypothetical protein C48C5.1 [Caenorhabditis elegans] ref|NP_509515.1| C48C5.1 [Caenorhabditis elegans] 0.0
blast CAE57312 Hypothetical protein CBG00234 [Caenorhabditis briggsae] 0.0
blast XP_395140 PREDICTED: similar to ENSANGP00000022942 [Apis mellifera] 2.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.2E-42
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509515.1 7 54-76,89-111,126-148,169-191,232-254,284-306,321-343
C48C5.1 7 54-76,89-111,126-148,169-191,232-254,284-306,321-343
Sequence
Target Sequence 
>C. ELEGANS:193114_AT
ggattttctctatcctttgtgctatgccctttgcgatccatcaccgagccgattacatta
tgaaaagctggccagggacagacaacagaataccggttaaatcttcaaaaatgtgcatga
tagcagtgatgtttgaaccaaagctagcgtcaacttttaagattctatttcacttctctg
ccatagcattctttgcactcccactgtttacaattgtaattctctatgcaagaattgcat
gtaaggtatccagcaacagaacaattcaaccaggcgaacttgatatcactgaggaactgc
aaatgagaatcaatgcaattttatgtgcaatcgtttcggctttcttcatctgctaccttc
cgtttcaattgcaacgtctcttgtttttctattttgataatgaagttattttgacatggg
tcaatcagtatatgtattttatctcaggattccttttctatcttgccactatcatcaatc
ctattgcctataaccttgcatccagccgttttcgaagagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTTTCTCTATCCTTTGTGCTAT 520 509 545 Antisense
TAAGATTCTATTTCACTTCTCTGCC 628 637 702 Antisense
TCTGCCATAGCATTCTTTGCACTCC 530 609 721 Antisense
TTGCACTCCCACTGTTTACAATTGT 382 703 737 Antisense
TATGTGCAATCGTTTCGGCTTTCTT 424 655 866 Antisense
TGCTACCTTCCGTTTCAATTGCAAC 358 579 895 Antisense
ATTGCAACGTCTCTTGTTTTTCTAT 459 5 912 Antisense
TCTCAGGATTCCTTTTCTATCTTGC 461 613 986 Antisense
ATCTTGCCACTATCATCAATCCTAT 368 31 1004 Antisense
TATTGCCTATAACCTTGCATCCAGC 625 663 1026 Antisense
GCATCCAGCCGTTTTCGAAGAGCAT 567 307 1042 Antisense
Sequence Source Affymetrix Proprietary Database