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[193112_at] Yeast hypothetical protein YOR316OW like

Description F27D4.4 /REP_DB=WormBase Gene ID /WP=CE09729 /TR=Q93618 /GB=CAB01969.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YOR316OW like
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 33      4grp_high_8_8 > 59      6grp_highest_nonorm > 75      6grp_total > 45      4grp_total > 60      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 673
1 2 3 4 range
A 973.8
(3)
P 		974.7
(3)
P 		870.4
(1.3)
P 		604.6
(-3)
P 		370
B 1057.8
(3)
P 		853.1
(0.6)
P 		917.5
(1.3)
P 		555.5
(-3)
P 		502
C 951.9
(1.2)
P 		920.5
(0.9)
P 		1151
(3)
P 		478
(-3)
P 		673
avr 994.5
(3) 		916.1
(2) 		979.6
(2.8) 		546
(-3) 		449

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 412
1 2 3 4 5 6 range
A 671.3
(-2.6)
P 		930.4
(3)
P 		885.2
(2)
P 		851.5
(1.3)
P 		651
(-3)
P 		716.7
(-1.6)
P 		279
B 816
(1)
P 		791
(0.5)
P 		918.3
(3)
P 		786.7
(0.4)
P 		614.4
(-3)
P 		867.5
(2)
P 		304
C 924.8
(2.2)
P 		977.4
(3)
P 		773.8
(0)
P 		836
(0.9)
P 		565.5
(-3)
P 		872.1
(1.5)
P 		412
avr 804
(1) 		899.6
(3) 		859.1
(2.2) 		824.7
(1.4) 		610.3
(-3) 		818.8
(1.3) 		289
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 354.6
(3)
P 		211.6
(-0.2)
P 		227.6
(0.1)
P 		88.5
(-3)
P 		266
B 337.3
(3)
P 		210.7
(-0.5)
P 		212.6
(-0.4)
P 		118.4
(-3)
P 		219
C 315.1
(1.4)
P 		264.7
(0.4)
P 		401.2
(3)
P 		80.6
(-3)
P 		321
avr 335.7
(3) 		229
(0.3) 		280.5
(1.6) 		95.8
(-3) 		240

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 123.7
(-3)
P 		330.9
(3)
P 		192.8
(-1)
P 		216
(-0.3)
P 		196.4
(-0.9)
P 		174.5
(-1.5)
P 		207
B 283.9
(0.9)
P 		263.3
(-0.1)
P 		223
(-2.2)
P 		208.4
(-3)
P 		249.6
(-0.9)
P 		323.5
(3)
P 		115
C 342.8
(3)
P 		298.2
(1.5)
P 		196.9
(-2)
P 		168.1
(-3)
P 		183
(-2.5)
P 		291.9
(1.3)
P 		175
avr 250.1
(0.2) 		297.5
(3) 		204.2
(-2.6) 		197.5
(-3) 		209.7
(-2.3) 		263.3
(0.9) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193112_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1411
Sequence Type Exemplar sequence
Representative Public ID F27D4.4 NCBI
Target Description F27D4.4 /REP_DB=WormBase Gene ID /WP=CE09729 /TR=Q93618 /GB=CAB01969.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YOR316OW like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059747(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059747 NCBI Caenorhabditis elegans F27D4.4 (F27D4.4) mRNA, complete cds. 11/11 None
SNAP00000008676 ENSEMBL cdna:SNAP chromosome:CEL140:I:7733156:7735003:1 11/11 None
GENEFINDER00000008684 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7733156:7735003:1 11/11 None
F27D4.4 ENSEMBL cdna:known chromosome:CEL140:I:7733146:7735239:1 gene:F27D4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7733086-7734934(+) 94.1 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical protein YOR316OW like
Ensembl F27D4.4
Entrez Gene 172538 Entrez gene
SwissProt Q93618 EMBL-EBI
WormBase CE36141 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265310_AT zinc finger (CCCH-type) family protein at
CANINE:1606191_AT similar to brain zinc finger protein cfa
CANINE_2:CFA.21382.1.S1_S_AT similar to brain zinc finger protein cfa
CANINE_2:CFA.768.1.S1_AT similar to brain zinc finger protein cfa
CANINE_2:CFAAFFX.22376.1.S1_S_AT similar to brain zinc finger protein cfa
DROSOPHILA_2:1639198_AT dm
DROSGENOME1:153244_AT dm
CHICKEN:GGAAFFX.12159.1.S1_S_AT similar to LEREPO4 protein gga
HG-U133_PLUS_2:201595_S_AT likely ortholog of mouse immediate early response, erythropoietin 4 hs
HG-U133A_2:201595_S_AT likely ortholog of mouse immediate early response, erythropoietin 4 hs
HG-U133A:201595_S_AT likely ortholog of mouse immediate early response, erythropoietin 4 hs
HG-U95AV2:35750_AT likely ortholog of mouse immediate early response, erythropoietin 4 hs
HU35KSUBA:RC_AA280865_AT likely ortholog of mouse immediate early response, erythropoietin 4 hs
U133_X3P:G8923807_3P_A_AT likely ortholog of mouse immediate early response, erythropoietin 4 hs
U133_X3P:HS.6375.0.A1_3P_A_AT likely ortholog of mouse immediate early response, erythropoietin 4 hs
HG-U133A_2:201593_S_AT likely ortholog of mouse immediate early response, erythropoietin 4 hs
HG-U133_PLUS_2:201593_S_AT likely ortholog of mouse immediate early response, erythropoietin 4 hs
HG-U133A:201593_S_AT likely ortholog of mouse immediate early response, erythropoietin 4 hs
HG-U95D:91845_AT likely ortholog of mouse immediate early response, erythropoietin 4 hs
HG-U95E:68300_AT Likely ortholog of mouse immediate early response, erythropoietin 4 hs
MOUSE430_2:1453684_S_AT RIKEN cDNA 2610312B22 gene mm
MOE430B:1453684_S_AT RIKEN cDNA 2610312B22 gene mm
MU11KSUBA:AA107660_S_AT RIKEN cDNA 2610312B22 gene mm
MG-U74AV2:161454_R_AT RIKEN cDNA 2610312B22 gene mm
MG-U74AV2:160251_AT RIKEN cDNA 2610312B22 gene mm
MOE430A:1427877_AT RIKEN cDNA 2610312B22 gene mm
MOUSE430A_2:1427877_AT RIKEN cDNA 2610312B22 gene mm
MOUSE430_2:1427877_AT RIKEN cDNA 2610312B22 gene mm
MOE430A:1427876_AT RIKEN cDNA 2610312B22 gene mm
MOUSE430A_2:1427876_AT RIKEN cDNA 2610312B22 gene mm
MOUSE430_2:1427876_AT RIKEN cDNA 2610312B22 gene mm
MOE430B:1446512_AT RIKEN cDNA 2610312B22 gene mm
MOUSE430_2:1446512_AT RIKEN cDNA 2610312B22 gene mm
MU19KSUBC:TC40375_R_AT RIKEN cDNA 2610312B22 gene (2610312B22Rik), mRNA mm
RG-U34C:RC_AI179144_AT brain zinc finger protein rn
RAE230A:1373380_AT brain zinc finger protein rn
RAT230_2:1373380_AT brain zinc finger protein rn
RAE230B:1385921_AT brain zinc finger protein rn
RAT230_2:1385921_AT brain zinc finger protein rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01969 Hypothetical protein F27D4.4 [Caenorhabditis elegans] ref|NP_492148.2| F27D4.4 [Caenorhabditis elegans] 1.0E-173
blast CAB01969 Hypothetical protein F27D4.4 [Caenorhabditis elegans] ref|NP_492148.2| F27D4.4 [Caenorhabditis elegans] 1.0E-160
blast CAE57350 Hypothetical protein CBG00292 [Caenorhabditis briggsae] 1.0E-140
blast CAE57350 Hypothetical protein CBG00292 [Caenorhabditis briggsae] 1.0E-137
blast XP_884055 PREDICTED: similar to brain zinc finger protein isoform 6 [Bos taurus] 4.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 8.1E-7
Sequence
Target Sequence 
>C. ELEGANS:193112_AT
aatatcggcattgtctaccagaaggatatgttttgaaaaaggaacggaaagcaatggagc
aacaaaaagaagatgaaattagtattgaggaacttgttgagaaagagagagccgctttga
gttcgaaaaatctcacaaaattaacactccaaaccttcattgcctggaagaagaagaagt
taagagagcgaaaagagaaagaagaagccgatttgaaagaaaagaaagagaagatcaaat
ctggaaaacataatggaatgtctggacgtgatcttttcttatatgacgccaatctggtca
acaacgacgacgacgaggccggagatattgagatggagaaggaagaagttgatgagaatg
aaaaggtatttgaaatcgatgccaacttcttcaaattcgacggaatggacgatgaactga
cggatcaaatgagcaaatcctcgactgctgttgaatctactgctaaaggaatggcaaaga
tggacatcaacgaggacttgttcgacattgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATCGGCATTGTCTACCAGAAGG 387 173 617 Antisense
AGAGAGCCGCTTTGAGTTCGAAAAA 220 59 722 Antisense
ATCTCACAAAATTAACACTCCAAAC 697 31 746 Antisense
CACTCCAAACCTTCATTGCCTGGAA 92 199 761 Antisense
GTGATCTTTTCTTATATGACGCCAA 675 483 884 Antisense
CGACGAGGCCGGAGATATTGAGATG 627 251 927 Antisense
CCAACTTCTTCAAATTCGACGGAAT 284 275 998 Antisense
GGAATGGACGATGAACTGACGGATC 174 533 1018 Antisense
GCAAATCCTCGACTGCTGTTGAATC 55 319 1049 Antisense
GACTGCTGTTGAATCTACTGCTAAA 576 375 1059 Antisense
ACGAGGACTTGTTCGACATTGACGA 617 93 1106 Antisense
Sequence Source Affymetrix Proprietary Database