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[193107_s_at]

Description F55B12.3 /REP_DB=WormBase Gene ID /WP=CE25007 /CHR=5 /FEA=Sanger Annotation /DEF=locus:sel-10 Candida CDC4 proteion like (HINXTON) SW:Q93794 protein_id:CAB02129.2
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 97      4grp_highest_8_8 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 72      6grp_total > 85      4grp_total > 63      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 298.7
(2.4)
P 		203.5
(-3)
P 		309.5
(3)
P 		225.3
(-1.8)
P 		106
B 374.9
(-1.3)
P 		341.9
(-3)
P 		458.7
(3)
P 		421.9
(1.1)
P 		117
C 437.3
(2.6)
P 		399.8
(0.8)
P 		445.9
(3)
P 		319.5
(-3)
P 		126
avr 370.3
(0.7) 		315.1
(-3) 		404.7
(3) 		322.2
(-2.5) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 388
1 2 3 4 5 6 range
A 245.4
(-3)
P 		597.6
(2.9)
P 		280.9
(-2.4)
P 		561.6
(2.3)
P 		392
(-0.5)
P 		600.8
(3)
P 		355
B 382.2
(0.7)
P 		313.1
(-0.8)
P 		212.4
(-3)
P 		489.4
(3)
P 		405.2
(1.2)
P 		450
(2.1)
P 		277
C 479.7
(0.2)
P 		354
(-3)
P 		543.4
(1.9)
P 		383.7
(-2.2)
P 		586.3
(3)
P 		485.3
(0.4)
P 		232
avr 369.1
(-2.2) 		421.6
(-0.3) 		345.6
(-3) 		478.2
(1.8) 		461.2
(1.2) 		512
(3) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 108.7
(3)
P 		44.2
(-2.1)
P 		80.9
(0.8)
P 		33
(-3)
P 		76
B 119.6
(3)
P 		84.4
(-3)
P 		106.3
(0.7)
P 		89.9
(-2.1)
P 		35
C 144.8
(2.4)
P 		114.9
(0.6)
P 		155.4
(3)
P 		53.9
(-3)
P 		102
avr 124.4
(3) 		81.2
(-1) 		114.2
(2.1) 		58.9
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 45.2
(-3)
P 		212.5
(3)
P 		61.2
(-2.4)
P 		142.4
(0.5)
P 		118.3
(-0.4)
P 		146.3
(0.6)
P 		167
B 133
(1.2)
P 		104.2
(-0.3)
P 		51.6
(-3)
P 		129.6
(1)
P 		164.6
(2.8)
P 		167.8
(3)
P 		116
C 177.8
(2.4)
P 		108
(-1.4)
P 		138.3
(0.3)
P 		77.2
(-3)
P 		189.7
(3)
P 		162.5
(1.5)
P 		113
avr 118.7
(-0.2) 		141.6
(1.6) 		83.7
(-3) 		116.4
(-0.4) 		157.5
(2.9) 		158.9
(3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193107_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13418
Sequence Type Exemplar sequence
Representative Public ID F55B12.3 NCBI
Target Description F55B12.3 /REP_DB=WormBase Gene ID /WP=CE25007 /CHR=5 /FEA=Sanger Annotation /DEF=locus:sel-10 Candida CDC4 proteion like (HINXTON) SW:Q93794 protein_id:CAB02129.2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028804(11), NM_074020(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028804 NCBI Caenorhabditis elegans Suppressor/Enhancer of Lin-12 family member (sel-10) (sel-10) mRNA, complete cds. 11/11 None
NM_074020 NCBI Caenorhabditis elegans Suppressor/Enhancer of Lin-12 family member (sel-10) (sel-10) mRNA, complete cds. 11/11 A 
SNAP00000009640 ENSEMBL cdna:SNAP chromosome:CEL140:V:13821954:13824967:1 11/11 None
GENEFINDER00000009655 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13821954:13824967:1 11/11 None
F55B12.3b.2 ENSEMBL cdna:known chromosome:CEL140:V:13820721:13825661:1 gene:F55B12.3 11/11 None
F55B12.3a ENSEMBL cdna:known chromosome:CEL140:V:13821949:13825569:1 gene:F55B12.3 11/11 A 
F55B12.3b.1 ENSEMBL cdna:known chromosome:CEL140:V:13821950:13826768:1 gene:F55B12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13821953-13824967(+) 100.0 100.0
Public Domain and Genome References
Ensembl F55B12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42307 Hypothetical protein F55B12.3b [Caenorhabditis elegans] ref|NP_001023975.1| Suppressor/Enhancer of Lin-12 family member (sel-10) [Caenorhabditis elegans] 0.0
blast CAB02129 Hypothetical protein F55B12.3a [Caenorhabditis elegans] ref|NP_506421.1| Suppressor/Enhancer of Lin-12 family member (sel-10) [Caenorhabditis elegans] sp|Q93794|SEL10_CAEEL F-box/WD-repeat protein sel-10 (Suppressor/enhancer of lin-12) (Sel-10 protein) gb|AAC47809.1| SEL-10 [Caenorhabditis elegans] 0.0
blast CAE66232 Hypothetical protein CBG11475 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.7E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.4E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.2E-12
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.0E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.6E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2E-11
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.7E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.4E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.2E-12
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.0E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.6E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2E-11
Sequence
Target Sequence 
>C. ELEGANS:193107_S_AT
atgtatccgtactctgaccggtcataacaatagagtttattctcttctctttgaaagcga
gcgatcgatcgtgtgctctggctctctggacacttcaattcgcgtgtgggattttacacg
accggaaggccaagaatgtgtggctcttttgcaaggacacacctcacttacatccggaat
gcaacttcgaggcaatattctcgtgtcatgcaatgcagatagccatgttagagtatggga
tattcacgagggaacttgtgtacacatgctttctggacatcgatccgctatcacttcact
tcaatggtttggacgaaatatggtagcaacgagtagtgacgatggaactgtcaaattgtg
ggatattgagagaggtgcactgattcgagatctagtaactttggattctggaggcaatgg
tggctgtatttggagactttgttctacttctacgatgctagcgtgtgcagtcggatctcg
taa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTATCCGTACTCTGACCGGTCAT 634 45 1239 Antisense
GCGAGCGATCGATCGTGTGCTCTGG 72 291 1295 Antisense
CTCTCTGGACACTTCAATTCGCGTG 400 231 1320 Antisense
TGCAAGGACACACCTCACTTACATC 266 577 1388 Antisense
GCAATATTCTCGTGTCATGCAATGC 308 323 1430 Antisense
ACTTGTGTACACATGCTTTCTGGAC 377 103 1492 Antisense
TTTCTGGACATCGATCCGCTATCAC 231 671 1508 Antisense
GCTATCACTTCACTTCAATGGTTTG 671 303 1525 Antisense
GAGAGAGGTGCACTGATTCGAGATC 590 395 1606 Antisense
GGAGACTTTGTTCTACTTCTACGAT 682 515 1670 Antisense
TAGCGTGTGCAGTCGGATCTCGTAA 388 651 1697 Antisense
Sequence Source Affymetrix Proprietary Database