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[193099_s_at] Uncharacterized protein family UPF0031

Description R107.2 /REP_DB=WormBase Gene ID /WP=CE23917 /TR=SW:P32740 /GB=CAA78469.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Uncharacterized protein family UPF0031
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 73      6grp_total > 75      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 427.8
(-3)
P 		474.9
(-0.5)
P 		428.6
(-3)
P 		539.6
(3)
P 		112
B 487.6
(2.9)
P 		331.5
(-3)
P 		429.8
(0.7)
P 		489.3
(3)
P 		158
C 465.2
(2.9)
P 		300.5
(-3)
P 		401.1
(0.6)
P 		467.2
(3)
P 		167
avr 460.2
(1.2) 		369
(-3) 		419.8
(-0.6) 		498.7
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 384
1 2 3 4 5 6 range
A 357.3
(-3)
P 		459.2
(-1.4)
P 		554.1
(0.1)
P 		741.4
(3)
P 		462.6
(-1.4)
P 		691.2
(2.2)
P 		384
B 382.2
(-2.5)
P 		360.7
(-3)
P 		547
(1.4)
P 		554.7
(1.6)
P 		471.4
(-0.4)
P 		614.6
(3)
P 		254
C 361.3
(-3)
P 		408.5
(-2.2)
P 		599
(0.8)
P 		569.3
(0.3)
P 		510.7
(-0.6)
P 		735.8
(3)
P 		375
avr 366.9
(-3) 		409.5
(-2.2) 		566.7
(0.8) 		621.8
(1.9) 		481.6
(-0.8) 		680.5
(3) 		314
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 155.7
(3)
P 		103.1
(-1.1)
P 		112
(-0.4)
P 		79
(-3)
P 		77
B 155.5
(3)
P 		81.9
(-3)
P 		99.6
(-1.6)
P 		104.3
(-1.2)
P 		74
C 154
(3)
P 		86.4
(-2.4)
P 		139.8
(1.9)
P 		78.8
(-3)
P 		75
avr 155.1
(3) 		90.5
(-2.7) 		117.1
(-0.4) 		87.4
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 65.9
(-3)
P 		163.3
(1.8)
P 		120.7
(-0.3)
P 		188
(3)
P 		139.6
(0.6)
P 		168.3
(2)
P 		122
B 133
(-2.3)
P 		120.1
(-3)
P 		132.8
(-2.3)
P 		146.9
(-1.5)
P 		191.5
(0.9)
P 		229.2
(3)
P 		109
C 133.9
(-2.1)
P 		124.6
(-2.5)
P 		152.4
(-1.3)
P 		114.5
(-3)
P 		165.3
(-0.7)
P 		246.3
(3)
P 		132
avr 110.9
(-3) 		136
(-1.5) 		135.3
(-1.6) 		149.8
(-0.7) 		165.5
(0.2) 		214.6
(3) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193099_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7375
Sequence Type Exemplar sequence
Representative Public ID R107.2 NCBI
Target Description R107.2 /REP_DB=WormBase Gene ID /WP=CE23917 /TR=SW:P32740 /GB=CAA78469.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Uncharacterized protein family UPF0031
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066600 NCBI Caenorhabditis elegans R107.2 (R107.2) mRNA, complete cds. 11/11 None
SNAP00000003023 ENSEMBL cdna:SNAP chromosome:CEL140:III:9043859:9045293:-1 11/11 None
GENEFINDER00000003030 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9043859:9050597:-1 11/11 None
R107.2 ENSEMBL cdna:known chromosome:CEL140:III:9043853:9045837:-1 gene:R107.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9043854-9045833(-) 100.0 100.0
Public Domain and Genome References
Gene Title Uncharacterized protein family UPF0031
Ensembl R107.2
Entrez Gene 176277 Entrez gene
SwissProt P32740 EMBL-EBI
WormBase CE23917 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD45600 Hypothetical protein R107.4c [Caenorhabditis elegans] ref|NP_871628.1| R107.4c [Caenorhabditis elegans] 0.0
blast C88546 protein R107.4 [imported] - Caenorhabditis elegans 0.0
blast CAI46627 Hypothetical protein R107.4d [Caenorhabditis elegans] ref|NP_001022708.1| R107.4d [Caenorhabditis elegans] 0.0
blast CAA78469 Hypothetical protein R107.2 [Caenorhabditis elegans] ref|NP_499001.1| R107.2 [Caenorhabditis elegans] sp|P32740|YNH2_CAEEL Hypothetical UPF0031 protein R107.2 in chromosome III 1.0E-178
blast CAA78469 Hypothetical protein R107.2 [Caenorhabditis elegans] ref|NP_499001.1| R107.2 [Caenorhabditis elegans] sp|P32740|YNH2_CAEEL Hypothetical UPF0031 protein R107.2 in chromosome III 1.0E-164
blast B88546 protein R107.2 [imported] - Caenorhabditis elegans 1.0E-164
blast B88546 protein R107.2 [imported] - Caenorhabditis elegans 1.0E-163
blast CAE62677 Hypothetical protein CBG06820 [Caenorhabditis briggsae] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR000631 EMBL-EBI Protein of unknown function UPF0031 1.0E-126
Pfam IPR000631 EMBL-EBI Protein of unknown function UPF0031 1.0E-126
Pfam IPR000719 EMBL-EBI Protein kinase 2.7E-24
Pfam IPR000719 EMBL-EBI Protein kinase 9.3E-4
Pfam IPR000631 EMBL-EBI Protein of unknown function UPF0031 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193099_S_AT
gacggtctttggtttgtgtctgagcatattgaaaaattcccacggcaaatgtcggctaca
gtactcacaccgaacattgttgagttctcacgtctgtgtaaatcggctcttggtgaagag
gatgtgctcaatgtgagaaataatagccaactacagcatttggctgccgagttgagtcgg
aaaatgaatgttacgatctatttgaagggagaagttgatctagtggtcaccccgaacggc
gaagtatcgaagtgttcaaccgaatcaagcttacgtcgctgtggtggtcaaggtgacgtc
actgctggaagtttgggccttttcttgtattgggcaaaaaaaaaccttggcgacgactgg
acatcagctcatcatgaagctggaattgcttcaagttggttggtcagaacagccggaaga
cgtgcattcgaaaaacatggacgatcaatgaacactccactattgctagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGTCTTTGGTTTGTGTCTGAGC 40 377 388 Antisense
AAAATTCCCACGGCAAATGTCGGCT 121 129 420 Antisense
AAATGTCGGCTACAGTACTCACACC 622 119 434 Antisense
CTCACGTCTGTGTAAATCGGCTCTT 246 229 474 Antisense
GAAGTTGATCTAGTGGTCACCCCGA 448 337 598 Antisense
GGTCACCCCGAACGGCGAAGTATCG 217 501 612 Antisense
CAAGCTTACGTCGCTGTGGTGGTCA 200 185 653 Antisense
GTCACTGCTGGAAGTTTGGGCCTTT 544 465 685 Antisense
TGGCGACGACTGGACATCAGCTCAT 497 543 735 Antisense
GAACAGCCGGAAGACGTGCATTCGA 159 351 794 Antisense
AATGAACACTCCACTATTGCTAGAT 678 163 834 Antisense
Sequence Source Affymetrix Proprietary Database