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[193097_s_at] Ribosomal protein L23

Description F55D10.2 /REP_DB=WormBase Gene ID /WP=CE02777 /GEN=rpl-25.1 /TR=SW:P48162 /GB=AAA81728.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Ribosomal protein L23
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 12      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 08      6grp_total > 23      4grp_total > 33      6grp_cgc > 70      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12153
1 2 3 4 range
A 21904.4
(-3)
P 		32439.1
(3)
P 		26704.1
(-0.3)
P 		30933.8
(2.1)
P 		10535
B 22380.3
(-3)
P 		24950.6
(0.4)
P 		26878.8
(3)
P 		25669.7
(1.4)
P 		4499
C 20285.7
(-3)
P 		23751.7
(0.5)
P 		21938.8
(-1.3)
P 		26167.9
(3)
P 		5882
avr 21523.5
(-3) 		27047.1
(2.5) 		25173.9
(0.6) 		27590.5
(3) 		6067

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16201
1 2 3 4 5 6 range
A 25623.9
(3)
P 		19516.7
(0)
P 		21331
(0.9)
P 		17095.6
(-1.2)
P 		13423
(-3)
P 		13334
(-3)
P 		12290
B 21185
(3)
P 		19980.2
(2.3)
P 		20323.8
(2.5)
P 		17301
(0.7)
P 		12794.6
(-2)
P 		11202.4
(-3)
P 		9983
C 18804.1
(1.5)
P 		20265.2
(2.2)
P 		22028.8
(3)
P 		16669.9
(0.4)
P 		15184
(-0.3)
P 		9422.7
(-3)
P 		12606
avr 21871
(3) 		19920.7
(1.9) 		21227.9
(2.6) 		17022.2
(0.2) 		13800.5
(-1.6) 		11319.7
(-3) 		10551
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3563
1 2 3 4 range
A 7975.4
(3)
P 		7041.7
(1.4)
P 		6981
(1.3)
P 		4528.1
(-3)
P 		3447
B 7136.9
(3)
P 		6162.2
(-0.5)
P 		6228.4
(-0.3)
P 		5470.2
(-3)
P 		1667
C 6715.1
(1.3)
P 		6828.7
(1.5)
P 		7646.4
(3)
P 		4412.3
(-3)
P 		3234
avr 7275.8
(3) 		6677.5
(1.5) 		6951.9
(2.2) 		4803.5
(-3) 		2472

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4217
1 2 3 4 5 6 range
A 4723.6
(-0.6)
P 		6941.1
(3)
P 		4645.4
(-0.7)
P 		4335.8
(-1.2)
P 		4050.5
(-1.7)
P 		3246.4
(-3)
P 		3695
B 7371.3
(3)
P 		6650.6
(1.6)
P 		4935.2
(-1.6)
P 		4582.4
(-2.2)
P 		5198.3
(-1.1)
P 		4177.3
(-3)
P 		3194
C 6969.9
(3)
P 		6183.5
(1.8)
P 		5606.7
(0.9)
P 		3352.3
(-2.7)
P 		4913.3
(-0.2)
P 		3154.3
(-3)
P 		3816
avr 6354.9
(2.5) 		6591.7
(3) 		5062.4
(0) 		4090.2
(-1.9) 		4720.7
(-0.7) 		3526
(-3) 		3066
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193097_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16799
Sequence Type Exemplar sequence
Representative Public ID F55D10.2 NCBI
Target Description F55D10.2 /REP_DB=WormBase Gene ID /WP=CE02777 /GEN=rpl-25.1 /TR=SW:P48162 /GB=AAA81728.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Ribosomal protein L23
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076407(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076407 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-25.1) (rpl-25.1) mRNA, complete cds. 11/11 None
SNAP00000004376 ENSEMBL cdna:SNAP chromosome:CEL140:X:4715153:4715721:1 11/11 None
GENEFINDER00000004386 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4715153:4715721:1 11/11 None
F55D10.2.2 ENSEMBL cdna:known chromosome:CEL140:X:4715137:4715893:1 gene:F55D10.2 11/11 None
F55D10.2.1 ENSEMBL cdna:known chromosome:CEL140:X:4715147:4715893:1 gene:F55D10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4715153-4715722(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ribosomal protein L23
Gene Symbol rpl-25.1
Ensembl F55D10.2
Entrez Gene 180748 Entrez gene
SwissProt P48162 EMBL-EBI
WormBase CE02777 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16544_S_AT 60S ribosomal protein L23A (RPL23aA) at
ATGENOME1:13616_S_AT 60S ribosomal protein L23A (RPL23aA) at
ATH1-121501:266981_AT 60S ribosomal protein L23A (RPL23aA) at
CANINE:1583749_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFA.394.1.A1_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.10089.1.S1_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.11362.1.S1_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.17447.1.S1_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.20956.1.S1_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.20956.1.S1_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.20985.1.S1_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.21051.1.S1_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.23711.1.S1_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.24940.1.S1_S_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.26692.1.S1_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.2686.1.S1_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.2686.1.S1_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.27054.1.S1_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.4101.1.S1_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.4692.1.S1_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.5912.1.S1_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.5912.1.S1_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.725.1.S1_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.727.1.S1_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.7478.1.S1_X_AT similar to 60S ribosomal protein L23a cfa
CANINE_2:CFAAFFX.8146.1.S1_X_AT similar to 60S ribosomal protein L23a cfa
HG-U133A:208834_X_AT ribosomal protein L23a hs
HG-U133_PLUS_2:208834_X_AT ribosomal protein L23a hs
HG-U133A_2:208834_X_AT ribosomal protein L23a hs
HG-U133_PLUS_2:203012_X_AT ribosomal protein L23a hs
HG-U133A_2:203012_X_AT ribosomal protein L23a hs
HG-U133A:203012_X_AT ribosomal protein L23a hs
HG-U133_PLUS_2:208825_X_AT ribosomal protein L23a hs
HG-FOCUS:208825_X_AT ribosomal protein L23a hs
HG-U133A_2:208825_X_AT ribosomal protein L23a hs
HG-U133A:208825_X_AT ribosomal protein L23a hs
HG-U133A:213084_X_AT ribosomal protein L23a hs
HG-U133A_2:213084_X_AT ribosomal protein L23a hs
HG-U133_PLUS_2:213084_X_AT ribosomal protein L23a hs
HU35KSUBA:U43701_AT ribosomal protein L23a hs
HUGENEFL:U06155_AT ribosomal protein L23a hs
HUGENEFL:U06155_S_AT ribosomal protein L23a hs
U133_X3P:G1399085_3P_X_AT ribosomal protein L23a hs
HG-U95AV2:32341_F_AT ribosomal protein L23a hs
HG-U95D:72965_F_AT ribosomal protein L23a hs
HG-U95D:75029_AT ribosomal protein L23a hs
MOE430A:1437975_A_AT ribosomal protein L23a mm
MOUSE430A_2:1437975_A_AT ribosomal protein L23a mm
MOUSE430_2:1437975_A_AT ribosomal protein L23a mm
MU11KSUBA:AA538407_S_AT ribosomal protein L23a mm
MG-U74AV2:94823_AT ribosomal protein L23a mm
MOE430A:1426659_A_AT ribosomal protein L23a mm
MOUSE430A_2:1426659_A_AT ribosomal protein L23a mm
MOUSE430_2:1426659_A_AT ribosomal protein L23a mm
MOE430A:1426660_X_AT ribosomal protein L23a mm
MOUSE430A_2:1426660_X_AT ribosomal protein L23a mm
MOUSE430_2:1426660_X_AT ribosomal protein L23a mm
MOE430A:1437976_X_AT ribosomal protein L23a mm
MOUSE430A_2:1437976_X_AT ribosomal protein L23a mm
MOUSE430_2:1437976_X_AT ribosomal protein L23a mm
MU19KSUBB:TC29454_AT Ribosomal protein L23a, mRNA (cDNA clone MGC:36820 IMAGE:4163533) mm
MU19KSUBC:TC40966_AT Ribosomal protein L23a, mRNA (cDNA clone MGC:36820 IMAGE:4163533) mm
RG-U34A:X65228CDS_S_AT similar to 60S ribosomal protein L23a rn
RG-U34C:RC_AI231140_G_AT similar to 60S ribosomal protein L23a rn
RAE230A:1371313_AT similar to 60S ribosomal protein L23a rn
RAT230_2:1371313_AT similar to 60S ribosomal protein L23a rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81728 Ribosomal protein, large subunit protein 25.1 [Caenorhabditis elegans] ref|NP_508808.1| Ribosomal Protein, Large subunit family member (rpl-25.1) [Caenorhabditis elegans] sp|P48162|R23A1_CAEEL 60S ribosomal protein L23a 1.0E-65
blast CAE68639 Hypothetical protein CBG14529 [Caenorhabditis briggsae] 1.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR005633 EMBL-EBI Ribosomal protein L23, N-terminal domain 1.2E-26
Pfam IPR001014 EMBL-EBI Ribosomal L23 protein 2.3E-31
Sequence
Target Sequence 
>C. ELEGANS:193097_S_AT
tgccccaaagacctccaagatggaccacttccgcatcatccaacacccattgaccactga
gtccgccatgaagaagatcgaggagcacaacacccttgtcttcatcgtcagcaacgacgc
caacaagtaccaaatcaaggacgccgtccacaagctctacaacgtccaagccctcaaggt
caacaccctcatcactccacttcaacagaagaaggcttacgtccgcctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCCCAAAGACCTCCAAGATGGAC 470 585 177 Antisense
AAAGACCTCCAAGATGGACCACTTC 559 119 183 Antisense
TGACCACTGAGTCCGCCATGAAGAA 689 567 227 Antisense
ACTGAGTCCGCCATGAAGAAGATCG 560 95 232 Antisense
CCTTGTCTTCATCGTCAGCAACGAC 151 271 270 Antisense
GTCAGCAACGACGCCAACAAGTACC 531 463 283 Antisense
CGACGCCAACAAGTACCAAATCAAG 620 251 291 Antisense
TCAAGGACGCCGTCCACAAGCTCTA 143 633 311 Antisense
TCCACAAGCTCTACAACGTCCAAGC 160 589 323 Antisense
CTCATCACTCCACTTCAACAGAAGA 239 229 364 Antisense
CAGAAGAAGGCTTACGTCCGCCTCA 303 205 382 Antisense
Sequence Source Affymetrix Proprietary Database