[Home] | [Total List]

[193096_at]

Description F13G3.7 /REP_DB=WormBase Gene ID /WP=CE27125 /TR=Q19422 /GB=CAA95794.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast mitochondrial carrier protein like
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 31      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 41      6grp_total > 21      4grp_total > 50      6grp_highest_sub > 02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 761
1 2 3 4 range
A 799.4
(-1.2)
P 		1161
(3)
P 		1043.8
(1.6)
P 		645.3
(-3)
P 		516
B 787.6
(-1.9)
P 		1244.9
(3)
P 		1151.2
(2)
P 		686.8
(-3)
P 		558
C 836.4
(-2.8)
P 		1262.1
(1.5)
P 		1405.8
(3)
P 		821.1
(-3)
P 		585
avr 807.8
(-1.9) 		1222.7
(3) 		1200.3
(2.7) 		717.7
(-3) 		505

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 855
1 2 3 4 5 6 range
A 692
(-0.7)
P 		1077
(3)
P 		871.5
(1)
P 		742.5
(-0.3)
P 		459.8
(-3)
P 		465.7
(-2.9)
P 		617
B 824.3
(-0.2)
P 		893.2
(0.3)
P 		1282.5
(3)
P 		427.4
(-3)
P 		775.1
(-0.6)
P 		552.1
(-2.1)
P 		855
C 653
(-1.1)
P 		704.4
(1.5)
P 		635.5
(-1.9)
P 		633.6
(-2)
P 		734.7
(3)
P 		614
(-3)
P 		121
avr 723.1
(-0.2) 		891.5
(2.4) 		929.8
(3) 		601.2
(-2.1) 		656.5
(-1.2) 		543.9
(-3) 		386
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 291.1
(3)
P 		252
(1.8)
P 		272.9
(2.4)
P 		94.5
(-3)
P 		197
B 251.2
(0.9)
P 		307.5
(3)
P 		266.8
(1.5)
P 		146.4
(-3)
P 		161
C 276.9
(-0.6)
P 		362.9
(0.8)
P 		490
(3)
P 		138.4
(-3)
P 		352
avr 273.1
(1.1) 		307.5
(2) 		343.2
(3) 		126.4
(-3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 127.6
(-2.7)
P 		383
(3)
P 		189.8
(-1.3)
P 		188.3
(-1.3)
P 		138.8
(-2.4)
P 		113.4
(-3)
P 		270
B 286.8
(2.2)
P 		297.3
(2.5)
P 		311.4
(2.9)
P 		113.2
(-3)
P 		314.9
(3)
P 		205.9
(-0.2)
P 		202
C 242
(3)
P 		214.9
(1.6)
P 		161.8
(-1.2)
P 		127.4
(-3)
P 		237.7
(2.8)
P 		205.5
(1.1)
P 		115
avr 218.8
(-0.1) 		298.4
(3) 		221
(0) 		143
(-3) 		230.5
(0.4) 		174.9
(-1.8) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193096_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2251
Sequence Type Exemplar sequence
Representative Public ID F13G3.7 NCBI
Target Description F13G3.7 /REP_DB=WormBase Gene ID /WP=CE27125 /TR=Q19422 /GB=CAA95794.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast mitochondrial carrier protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059666
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000006946 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7313351:7316648:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001025933 1/11 Cross Hyb Matching Probes None
NM_059666 7/11 Cross Hyb Matching Probes None
SNAP00000006943 7/11 Cross Hyb Matching Probes None
F13G3.7b.1 1/11 Cross Hyb Matching Probes None
F13G3.7b.2 1/11 Cross Hyb Matching Probes None
F13G3.11.2 7/11 Cross Hyb Matching Probes None
F13G3.11.1 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7313281-7316579(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95794 Hypothetical protein F13G3.7a [Caenorhabditis elegans] ref|NP_001021103.1| F13G3.7a [Caenorhabditis elegans] 0.0
blast CAI46575 Hypothetical protein F13G3.7b [Caenorhabditis elegans] ref|NP_001021104.1| F13G3.7b [Caenorhabditis elegans] 0.0
blast CAE74210 Hypothetical protein CBG21892 [Caenorhabditis briggsae] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.9E-22
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.2E-12
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.9E-8
Pfam IPR005822 EMBL-EBI Ribosomal protein L13 1.1E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000006946 2 219-241,360-382
Sequence
Target Sequence 
>C. ELEGANS:193096_AT
ttaatattcttttttttctcactattctggttcggtcccttctcattttcgagtataaat
cctttgatgtttgctttttctttttgatttttccttttgaggacgccgaacttcttggtg
ataaagttgctcgatatctcgcagggaaacacaaaccaattttccatccagaaactgatt
gtggagatcatgtagttgttacaaactgcaaagatattgcaatgcatgcatttgactgga
aacacacaatttataagttcaatatggaatatccaaaaagtaaagctgatattccagcat
ggcagattcacgattacgatcaatgcagaatagcttttttatcggtttataggtcacttg
gaaataatcttctccgacgtcgtcacatccaacgcctacatttattcccagatgaagaaa
tggcagaatttgtacgaaaaaatattggaagtcagctgcgacaagttcaaggagttgtga
aacgaagtgatgaatatacggcagaagagagagcaaacttcccaagagttgtgaaattcg
cagataagcatgtcgttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATATTCTTTTTTTTCTCACTAT 328 685 932 Antisense
AATCCTTTGATGTTTGCTTTTTCTT 13 169 989 Antisense
TGATTTTTCCTTTTGAGGACGCCGA 94 563 1016 Antisense
AGGACGCCGAACTTCTTGGTGATAA 671 55 1031 Antisense
AAAGTTGCTCGATATCTCGCAGGGA 208 121 1054 Antisense
AACACAAACCAATTTTCCATCCAGA 403 133 1079 Antisense
CCAGCATGGCAGATTCACGATTACG 156 273 1225 Antisense
TGGAAATAATCTTCTCCGACGTCGT 401 547 1290 Antisense
CAACGCCTACATTTATTCCCAGATG 450 187 1321 Antisense
GTCAGCTGCGACAAGTTCAAGGAGT 17 467 1382 Antisense
AATTCGCAGATAAGCATGTCGTTGA 543 177 1466 Antisense
Sequence Source Affymetrix Proprietary Database