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[193095_at] Serine protease inhibitor, Kunitz type

Description ZC84.1 /REP_DB=WormBase Gene ID /WP=CE15020 /TR=SW:Q03610 /GB=CAA79569.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Serine protease inhibitor, Kunitz type
Cluster 6grp_total > 0      4grp_total > 57      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 60.8
(-1.2)
A 		96.5
(0.1)
A 		179.5
(3)
A 		8.1
(-3)
A 		171
B 39
(-1.5)
A 		128.5
(2.7)
A 		134.5
(3)
A 		7
(-3)
A 		128
C 34.5
(-2.3)
A 		182
(2.9)
A 		185
(3)
A 		15
(-3)
A 		170
avr 44.8
(-1.7) 		135.7
(1.8) 		166.3
(3) 		10
(-3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 76
(-1)
A 		131.2
(3)
A 		64.5
(-1.8)
A 		95.1
(0.4)
A 		72.6
(-1.3)
A 		48.6
(-3)
A 		83
B 54.1
(-1.4)
A 		99.6
(3)
A 		37.2
(-3)
A 		53.5
(-1.4)
A 		74.8
(0.6)
A 		52.1
(-1.6)
A 		62
C 50.4
(-3)
A 		121.3
(3)
A 		119.4
(2.8)
A 		110.5
(2.1)
A 		82.8
(-0.3)
A 		73.7
(-1)
A 		71
avr 60.2
(-2.8) 		117.4
(3) 		73.7
(-1.4) 		86.4
(-0.1) 		76.7
(-1.1) 		58.1
(-3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 22.1
(-0.3)
A 		21
(-0.4)
A 		46.9
(3)
A 		1.2
(-3)
A 		46
B 12.4
(-0.8)
A 		31.7
(3)
A 		31.2
(2.9)
A 		1.5
(-3)
A 		30
C 11.4
(-2.1)
A 		52.3
(1.8)
A 		64.5
(3)
A 		2.5
(-3)
A 		62
avr 15.3
(-1.2) 		35
(1.4) 		47.5
(3) 		1.7
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 14
(-2.6)
A 		46.7
(3)
A 		14
(-2.6)
A 		24.1
(-0.9)
A 		21.9
(-1.3)
A 		11.8
(-3)
A 		35
B 18.8
(-0.6)
A 		33.2
(3)
A 		9
(-3)
A 		14.2
(-1.7)
A 		30.4
(2.3)
A 		19.4
(-0.4)
A 		24
C 18.7
(-3)
A 		37
(3)
A 		30.4
(0.8)
A 		22.2
(-1.9)
A 		26.8
(-0.3)
A 		24.7
(-1)
A 		18
avr 17.2
(-3) 		39
(3) 		17.8
(-2.8) 		20.2
(-2.2) 		26.4
(-0.5) 		18.6
(-2.6) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7024
Sequence Type Exemplar sequence
Representative Public ID ZC84.1 NCBI
Target Description ZC84.1 /REP_DB=WormBase Gene ID /WP=CE15020 /TR=SW:Q03610 /GB=CAA79569.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Serine protease inhibitor, Kunitz type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066635 NCBI Caenorhabditis elegans ZC84.1 (ZC84.1) mRNA, complete cds. 11/11 None
SNAP00000020251 ENSEMBL cdna:SNAP chromosome:CEL140:III:9199849:9205962:-1 11/11 None
GENEFINDER00000020255 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9199849:9206295:-1 11/11 None
ZC84.1 ENSEMBL cdna:known chromosome:CEL140:III:9199849:9205944:-1 gene:ZC84.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9199844-9205940(-) 100.0 100.0
Public Domain and Genome References
Gene Title Serine protease inhibitor, Kunitz type
Ensembl ZC84.1
Entrez Gene 191073 Entrez gene
SwissProt Q03610 EMBL-EBI
WormBase CE15020 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA79569 Hypothetical protein ZC84.1 [Caenorhabditis elegans] ref|NP_499036.1| ZC84.1 [Caenorhabditis elegans] sp|Q03610|YN81_CAEEL Hypothetical protein ZC84.1 in chromosome III 0.0
blast CAE62775 Hypothetical protein CBG06944 [Caenorhabditis briggsae] 0.0
blast NP_497206 F30H5.3 [Caenorhabditis elegans] gb|AAA68408.1| Hypothetical protein F30H5.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 9.1E-31
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.0E-25
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.0E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.6E-17
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.2E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.5E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.4E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.8E-26
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 9.1E-31
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.0E-25
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.0E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.6E-17
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.2E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.5E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.4E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.8E-26
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 9.1E-31
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.0E-25
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.0E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.6E-17
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.2E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.5E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.4E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.8E-26
Sequence
Target Sequence 
>C. ELEGANS:193095_AT
ttaccttcttaacggtgctccacaaaaatgcacaatttcgcgttgtcctgcaggttatga
atgtacatatagaaataatggttatcattgttgttcaatggccaacaagccaggtctaac
tgttgctggaactaccggatcagttgtttcaaagtcaactccatctcctgaccaagaaaa
gtgcccacgtggaaatccattgatctatccatctacaagttctcctgtactttgtcaacc
aggaaaaagaggatgtccagttggctttggatgtgtgcagagctcgacatccaataatca
tatttgctgtccatctcgccattccgatcgacctggatatcaaagtgaatcgttcggact
tggagcatattacagtagagggccaccagcagccatcaatccatgtgaagggtacttagt
tcttgtaacaagaggtgttaatggaagaattgagaagagatgtgaaagaagctgcccgtt
ccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACCTTCTTAACGGTGCTCCACAA 498 681 3729 Antisense
TGCACAATTTCGCGTTGTCCTGCAG 379 575 3757 Antisense
TTTCAAAGTCAACTCCATCTCCTGA 506 671 3875 Antisense
TCTATCCATCTACAAGTTCTCCTGT 555 613 3932 Antisense
GTTCTCCTGTACTTTGTCAACCAGG 187 443 3947 Antisense
GTGCAGAGCTCGACATCCAATAATC 590 479 4003 Antisense
TAATCATATTTGCTGTCCATCTCGC 236 635 4023 Antisense
GCCATTCCGATCGACCTGGATATCA 93 281 4046 Antisense
GTGAATCGTTCGGACTTGGAGCATA 394 481 4073 Antisense
CACCAGCAGCCATCAATCCATGTGA 169 203 4112 Antisense
GATGTGAAAGAAGCTGCCCGTTCCC 263 407 4187 Antisense
Sequence Source Affymetrix Proprietary Database