[Home] | [Total List]

[193094_s_at]

Description Y52B11A.2 /REP_DB=WormBase Gene ID /WP=CE20291 /TR=Q9XWF4 /GB=CAA21718.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Uncharacterized protein family UPF0029
Cluster 6grp_high1_10_10 > 77      4grp_high_8_8 > 36      6grp_total > 77      4grp_total > 44      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 165.1
(0.9)
P 		178.4
(3)
A 		148.8
(-1.7)
P 		140.5
(-3)
A 		38
B 176.6
(1.4)
P 		198.8
(3)
A 		136.4
(-1.5)
P 		115.5
(-3)
P 		83
C 154.4
(-3)
P 		185.4
(3)
P 		166.9
(-0.6)
P 		181.6
(2.3)
P 		31
avr 165.4
(-0.2) 		187.5
(3) 		150.7
(-2.3) 		145.9
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 140.4
(-3)
A 		202.4
(-0.4)
P 		170.9
(-1.7)
P 		201.8
(-0.5)
P 		200.1
(-0.5)
P 		284.9
(3)
P 		145
B 202.6
(-1.3)
P 		206.8
(-1.2)
P 		225.7
(-0.6)
P 		151.5
(-3)
P 		237.2
(-0.2)
P 		333.7
(3)
P 		182
C 187.7
(-3)
P 		196.2
(-2.7)
P 		217.2
(-1.9)
P 		228.4
(-1.4)
P 		243.9
(-0.8)
P 		344.1
(3)
P 		156
avr 176.9
(-3) 		201.8
(-2) 		204.6
(-1.8) 		193.9
(-2.3) 		227.1
(-0.9) 		320.9
(3) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 60.1
(3)
P 		38.7
(-0.3)
A 		38.9
(-0.2)
P 		20.6
(-3)
A 		40
B 56.3
(3)
P 		49.1
(1.6)
A 		31.6
(-1.7)
P 		24.6
(-3)
P 		32
C 51.1
(1.5)
P 		53.3
(1.9)
P 		58.2
(3)
P 		30.6
(-3)
P 		28
avr 55.8
(3) 		47
(1.3) 		42.9
(0.5) 		25.3
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 25.9
(-3)
A 		72
(3)
P 		37.2
(-1.5)
P 		51.2
(0.3)
P 		60.4
(1.5)
P 		69.4
(2.7)
P 		46
B 70.5
(-0.8)
P 		68.8
(-1)
P 		54.8
(-2)
P 		40.1
(-3)
P 		96.4
(1)
P 		124.4
(3)
P 		84
C 69.6
(-0.9)
P 		59.9
(-1.8)
P 		55.3
(-2.2)
P 		45.9
(-3)
P 		78.9
(-0.1)
P 		115.2
(3)
P 		69
avr 55.3
(-2) 		66.9
(-0.8) 		49.1
(-2.6) 		45.7
(-3) 		78.6
(0.4) 		103
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193094_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.947
Sequence Type Exemplar sequence
Representative Public ID Y52B11A.2 NCBI
Target Description Y52B11A.2 /REP_DB=WormBase Gene ID /WP=CE20291 /TR=Q9XWF4 /GB=CAA21718.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Uncharacterized protein family UPF0029
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026611(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026611 NCBI Caenorhabditis elegans Y52B11A.2a (Y52B11A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000015607 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10974615:10978291:-1 11/11 None
Y52B11A.2a ENSEMBL cdna:known chromosome:CEL140:I:10974519:10978291:-1 gene:Y52B11A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026612 4/11 Cross Hyb Matching Probes None
Y52B11A.2b 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173001 2 1 NM_001026611 193094_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10974545-10978222(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y52B11A.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21718 Hypothetical protein Y52B11A.2a [Caenorhabditis elegans] ref|NP_001021782.1| Y52B11A.2a [Caenorhabditis elegans] 1.0E-147
blast CAE63529 Hypothetical protein CBG08009 [Caenorhabditis briggsae] 1.0E-112
blast CAE56638 Hypothetical protein CBG24397 [Caenorhabditis briggsae] 4.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR001498 EMBL-EBI Protein of unknown function UPF0029 2.7E-62
Pfam IPR006575 EMBL-EBI RWD 1.1E-32
Sequence
Target Sequence 
>C. ELEGANS:193094_S_AT
atctccgccaattttcgaactaagtggtccatatctccgtcgggagcagaaagaggtgct
tcacaacagtctaaatgacgtttatatcgaaaatatcggatttccagtgattttcaattg
gatatcccttgttcaagactttattcgggatcttcccgaagaagtagcggagcccagcca
tgtggccgatgacgtggtgacaccgatggccgaggaaatcgatgatatgaatattcgaca
cggagaagtgcttacagaccggaaaagtgcatttcaggctcatttggccgaggttcggag
taaggaagatgtggatcgagtgatgcgaatccttaaatcgaatacaaaaatctgccgggc
aacacataatattacagcatatcgatatatgactgaaatcaatggaaaaccaattcatca
tcatgattgtgtggatgatggggaatttggagcaagttcgaaaatgttagagctcatgga
tcgaatgaaagcggataatgtgatggtcgtcgtttcacgttggtacggtggaattcatct
tggacccgatcgttttcgacatatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCCGCCAATTTTCGAACTAAGT 540 31 165 Antisense
AACTAAGTGGTCCATATCTCCGTCG 357 139 182 Antisense
GAGGTGCTTCACAACAGTCTAAATG 594 401 217 Antisense
AATTGGATATCCCTTGTTCAAGACT 604 177 280 Antisense
CAAGACTTTATTCGGGATCTTCCCG 535 183 298 Antisense
CGAAGAAGTAGCGGAGCCCAGCCAT 519 253 321 Antisense
TGGTGACACCGATGGCCGAGGAAAT 352 553 359 Antisense
TTCAGGCTCATTTGGCCGAGGTTCG 255 685 437 Antisense
TGATGGTCGTCGTTTCACGTTGGTA 438 565 665 Antisense
GGTGGAATTCATCTTGGACCCGATC 112 499 691 Antisense
GGACCCGATCGTTTTCGACATATTA 563 521 706 Antisense
Sequence Source Affymetrix Proprietary Database