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[193092_s_at]

Description F44E2.6_rc /REP_DB=WormBase Gene ID /WP=CE00184 /TR=SW:P34436 /GB=AAA28039.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=Transcription regulation
Cluster 6grp_total > 63      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 14.7
(-3)
A 		16.4
(-2.6)
A 		18.6
(-2.2)
A 		43.2
(3)
A 		29
B 64.3
(3)
A 		18.3
(-2.6)
A 		14.9
(-3)
A 		19.4
(-2.5)
A 		49
C 11.3
(-3)
A 		22.5
(-2.3)
A 		12
(-3)
A 		109.7
(3)
A 		98
avr 30.1
(-0.9) 		19.1
(-2.4) 		15.2
(-3) 		57.4
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 18
(-2.7)
A 		15.6
(-2.7)
A 		177.8
(3)
A 		17
(-2.7)
A 		110.6
(0.6)
A 		8.4
(-3)
A 		169
B 17.3
(-2.8)
A 		14.7
(-3)
A 		81
(2.1)
A 		81.5
(2.2)
A 		16.5
(-2.9)
A 		92.1
(3)
A 		77
C 18.4
(-2.6)
A 		12
(-2.9)
A 		17.9
(-2.6)
A 		117.3
(3)
A 		11.5
(-3)
A 		10.9
(-3)
A 		106
avr 17.9
(-2.7) 		14.1
(-3) 		92.2
(3) 		71.9
(1.4) 		46.2
(-0.5) 		37.1
(-1.2) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.3
(0.8)
A 		3.6
(-3)
A 		4.9
(-0.1)
A 		6.3
(3)
A 		3
B 20.5
(3)
A 		4.5
(-2.6)
A 		3.5
(-3)
A 		4.1
(-2.8)
A 		17
C 3.7
(-3)
A 		6.5
(-1.9)
A 		4.2
(-2.8)
A 		18.5
(3)
A 		15
avr 9.8
(3) 		4.9
(-2.3) 		4.2
(-3) 		9.6
(2.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 3.3
(-2.8)
A 		5.5
(-2.4)
A 		38.7
(3)
A 		4.3
(-2.6)
A 		33.4
(2.1)
A 		2.1
(-3)
A 		37
B 6
(-2.8)
A 		4.9
(-3)
A 		19.7
(0)
A 		21.6
(0.4)
A 		6.7
(-2.6)
A 		34.3
(3)
A 		29
C 6.8
(-2.1)
A 		3.7
(-3)
A 		4.6
(-2.7)
A 		23.6
(3)
A 		3.7
(-3)
A 		3.7
(-3)
A 		20
avr 5.4
(-2.7) 		4.7
(-3) 		21
(3) 		16.5
(1.3) 		14.6
(0.6) 		13.4
(0.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193092_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28127
Sequence Type Exemplar sequence
Representative Public ID F44E2.6 NCBI
Target Description F44E2.6_rc /REP_DB=WormBase Gene ID /WP=CE00184 /TR=SW:P34436 /GB=AAA28039.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=Transcription regulation
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F44E2.6
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F44E2.6 F44E2.6_rc /REP_DB=WormBase Gene ID /WP=CE00184 /TR=SW:P34436 /GB=AAA28039.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=Transcription regulation A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066553 11/11 Negative Strand Matching Probes A 
SNAP00000040001 11/11 Negative Strand Matching Probes None
GENEFINDER00000040014 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8844474-8845073(+) 100.0 100.0
Public Domain and Genome References
Ensembl F44E2.6
Sequence
Target Sequence 
>C. ELEGANS:193092_S_AT
ttaatacagtatctctcgccagttgtttcttttggtccatcgttgaagacgtgaccgagg
tgggcatcacacgttttacatcgaacctccgtccgatgcattccgtgtgatctgtccaca
attcttacaatattcgcatcttgtcccacggattccgagaatgctggccagccacaccct
gcccagaatttggcgtcggaattgaaaagttctgagccacaacacaaacatacatatcgt
cccttttcaaagtggtcattgaatccgccagtgtgtggagtctcggttcctgattctctg
gcaactctgtaaacttcatttggcaaaaccgatttccattccgtttgtttcacatctttc
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATACAGTATCTCTCGCCAGTTG 50 683 47 Antisense
TCGCCAGTTGTTTCTTTTGGTCCAT 360 599 62 Antisense
ATCACACGTTTTACATCGAACCTCC 378 23 112 Antisense
GCATTCCGTGTGATCTGTCCACAAT 496 307 144 Antisense
TACAATATTCGCATCTTGTCCCACG 479 641 172 Antisense
ACACCCTGCCCAGAATTTGGCGTCG 629 103 220 Antisense
AACATACATATCGTCCCTTTTCAAA 265 137 273 Antisense
GAATCCGCCAGTGTGTGGAGTCTCG 675 327 307 Antisense
GATTCTCTGGCAACTCTGTAAACTT 39 433 338 Antisense
TGGCAAAACCGATTTCCATTCCGTT 308 545 367 Antisense
CATTCCGTTTGTTTCACATCTTTCG 328 217 383 Antisense
Sequence Source Affymetrix Proprietary Database