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[193090_at] olfactory receptor-like protein (weak)

Description F55D10.4 /REP_DB=WormBase Gene ID /WP=CE02779 /TR=Q20827 /GB=AAA81729.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=olfactory receptor-like protein (weak)
Cluster 6grp_total > 18      4grp_total > 23      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 198.8
(2)
P 		101.1
(-1.3)
P 		50
(-3)
A 		229.9
(3)
P 		180
B 252.1
(3)
P 		68.4
(-3)
A 		68.5
(-3)
A 		182
(0.7)
P 		184
C 224.3
(3)
P 		68.5
(-3)
A 		80.4
(-2.5)
A 		174
(1.1)
P 		156
avr 225.1
(3) 		79.3
(-2.5) 		66.3
(-3) 		195.3
(1.9) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 194.2
(3)
P 		70.6
(-2.5)
P 		64.3
(-2.7)
A 		104.7
(-1)
P 		111.1
(-0.7)
A 		58.3
(-3)
A 		136
B 191.1
(3)
P 		95.4
(-1.2)
P 		55.5
(-3)
A 		72.7
(-2.2)
A 		70.3
(-2.3)
P 		92.3
(-1.4)
P 		136
C 149.1
(3)
P 		130.5
(1.8)
P 		74.8
(-1.9)
A 		115.8
(0.8)
A 		58
(-3)
A 		92
(-0.8)
P 		91
avr 178.1
(3) 		98.8
(-1.2) 		64.9
(-3) 		97.7
(-1.3) 		79.8
(-2.2) 		80.9
(-2.2) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 72.4
(3)
P 		21.9
(-2.1)
P 		13.1
(-3)
A 		33.7
(-0.9)
P 		59
B 80.4
(3)
P 		16.9
(-2.9)
A 		15.9
(-3)
A 		38.8
(-0.9)
P 		65
C 74.3
(3)
P 		19.7
(-3)
A 		28
(-2.1)
A 		29.3
(-1.9)
P 		55
avr 75.7
(3) 		19.5
(-2.9) 		19
(-3) 		33.9
(-1.4) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 35.8
(3)
P 		25.1
(0.1)
P 		14
(-3)
A 		26.6
(0.5)
P 		33.5
(2.4)
A 		14.2
(-2.9)
A 		22
B 66.5
(3)
P 		31.8
(-0.9)
P 		13.5
(-3)
A 		19.2
(-2.4)
A 		28.5
(-1.3)
P 		34.4
(-0.6)
P 		53
C 55.3
(3)
P 		39.8
(0.5)
P 		19
(-3)
A 		23.3
(-2.3)
A 		18.8
(-3)
A 		30.8
(-1)
P 		37
avr 52.5
(3) 		32.2
(-0.3) 		15.5
(-3) 		23
(-1.8) 		26.9
(-1.2) 		26.5
(-1.2) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16926
Sequence Type Exemplar sequence
Representative Public ID F55D10.4 NCBI
Target Description F55D10.4 /REP_DB=WormBase Gene ID /WP=CE02779 /TR=Q20827 /GB=AAA81729.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=olfactory receptor-like protein (weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076408 NCBI Caenorhabditis elegans F55D10.4 (F55D10.4) mRNA, complete cds. 11/11 None
GENEFINDER00000004384 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4716558:4718431:-1 11/11 None
F55D10.4 ENSEMBL cdna:known chromosome:CEL140:X:4716558:4720609:-1 gene:F55D10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004377 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4716558-4720610(-) 97.19 100.0
Public Domain and Genome References
Gene Title olfactory receptor-like protein (weak)
Ensembl F55D10.4
Entrez Gene 186306 Entrez gene
SwissProt Q20827 EMBL-EBI
WormBase CE02779 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81729 Hypothetical protein F55D10.4 [Caenorhabditis elegans] ref|NP_508809.1| F55D10.4 [Caenorhabditis elegans] 1.0E-129
blast CAE68640 Hypothetical protein CBG14530 [Caenorhabditis briggsae] 1.0E-124
blast AAA81729 Hypothetical protein F55D10.4 [Caenorhabditis elegans] ref|NP_508809.1| F55D10.4 [Caenorhabditis elegans] 2.0E-79
blast CAE68640 Hypothetical protein CBG14530 [Caenorhabditis briggsae] 4.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508809.1 7 10-29,36-58,99-121,133-155,170-192,212-234,244-266
F55D10.4 7 10-29,36-58,99-121,133-155,170-192,212-234,244-266
GENEFINDER00000004384 5 15-39,51-73,88-110,130-152,162-184
Sequence
Target Sequence 
>C. ELEGANS:193090_AT
gaactcgactattagcttgctgaccttgctgacaattggatttgtgcacgcgctcgcgcg
acacaactatcatctatcgaggtctcaattatctcgattaatcggctcaacatggcttct
cgtaacgttactgcttctatccgactttttcctaatccgcctctcgagatcttttgtgtt
agcagtgccttttcatcttgctcttctatccgtattccttgtgctcaatttgattattca
tccgctcaatctcatccagctaatcatatcacaacgtcttaatccagaggaaaatagtca
aacagtacggttaaagaaggactgcgcaacagcgtcactatggttgctgttgaatagttt
atcatttattataatttttatgatggttgcctgggagtccaaggaaaaggaccagtataa
ctcaattatggggattgaagttgcggcattctctgttcattgtgtcgcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTCGACTATTAGCTTGCTGACC 460 349 321 Antisense
CTTGCTGACCTTGCTGACAATTGGA 301 219 336 Antisense
ACAACTATCATCTATCGAGGTCTCA 411 113 383 Antisense
TTAATCGGCTCAACATGGCTTCTCG 95 683 418 Antisense
GCTTCTCGTAACGTTACTGCTTCTA 60 307 435 Antisense
GCCTCTCGAGATCTTTTGTGTTAGC 176 283 479 Antisense
TTAGCAGTGCCTTTTCATCTTGCTC 510 681 499 Antisense
GATTATTCATCCGCTCAATCTCATC 384 429 552 Antisense
ATCTCATCCAGCTAATCATATCACA 369 31 569 Antisense
GAAGGACTGCGCAACAGCGTCACTA 74 335 636 Antisense
CATTCTCTGTTCATTGTGTCGCAAA 314 217 767 Antisense
Sequence Source Affymetrix Proprietary Database