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[193088_at]

Description W02B12.8 /REP_DB=WormBase Gene ID /WP=CE03768 /TR=Q23130 /GB=CAA91403.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=GTPase-activating (rhoGAP) like protein
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 89      4grp_highest_8_8 > 07      4grp_high_8_8 > 29      6grp_highest_nonorm > 75      6grp_total > 95      4grp_total > 26      6grp_cgc > 88      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 809.4
(-1.9)
P 		795.3
(-2.2)
P 		758.9
(-3)
P 		1038.8
(3)
P 		280
B 903.2
(-3)
P 		1061.7
(2.9)
P 		923.8
(-2.2)
P 		1065.1
(3)
P 		162
C 817
(-3)
P 		1036.1
(3)
P 		855
(-2)
P 		911.2
(-0.4)
P 		219
avr 843.2
(-3) 		964.4
(1.5) 		845.9
(-2.9) 		1005
(3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 539
1 2 3 4 5 6 range
A 943.3
(1)
P 		769
(-1)
P 		597.8
(-3)
P 		946
(1)
P 		1122.3
(3)
P 		946.9
(1)
P 		525
B 940.1
(1.4)
P 		728.6
(-1.2)
P 		583.3
(-3)
P 		939.4
(1.3)
P 		1074.9
(3)
P 		850
(0.3)
P 		492
C 843.4
(-1.1)
P 		789.7
(-1.9)
P 		755.2
(-2.4)
P 		718.8
(-3)
P 		1027.8
(1.7)
P 		1109.6
(3)
P 		391
avr 908.9
(0.7) 		762.4
(-1.4) 		645.4
(-3) 		868.1
(0.1) 		1075
(3) 		968.8
(1.5) 		430
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 294.7
(3)
P 		172.6
(-2.1)
P 		198.4
(-1.1)
P 		152.1
(-3)
P 		143
B 288
(3)
P 		262.2
(0.9)
P 		214.1
(-3)
P 		227
(-2)
P 		74
C 270.4
(1.9)
P 		297.9
(3)
P 		298
(3)
P 		153.6
(-3)
P 		144
avr 284.4
(3) 		244.2
(0.7) 		236.8
(0.3) 		177.6
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 173.9
(-1.7)
P 		273.5
(1.1)
P 		130.2
(-3)
P 		239.9
(0.2)
P 		338.7
(3)
P 		230.5
(-0.1)
P 		209
B 327.1
(0.8)
P 		242.5
(-0.9)
P 		141.6
(-3)
P 		248.8
(-0.8)
P 		436.7
(3)
P 		317
(0.6)
P 		295
C 312.6
(1.4)
P 		240.9
(-0.5)
P 		192.2
(-1.7)
P 		144.5
(-3)
P 		332.6
(2)
P 		371.5
(3)
P 		227
avr 271.2
(0.3) 		252.3
(-0.3) 		154.7
(-3) 		211.1
(-1.4) 		369.3
(3) 		306.3
(1.2) 		215
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193088_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2719
Sequence Type Exemplar sequence
Representative Public ID W02B12.8 NCBI
Target Description W02B12.8 /REP_DB=WormBase Gene ID /WP=CE03768 /TR=Q23130 /GB=CAA91403.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=GTPase-activating (rhoGAP) like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027219(11), NM_001027220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027219 NCBI Caenorhabditis elegans Rho GTPase Activating protein family member (rga-1) (rga-1) mRNA, complete cds. 11/11 None
NM_001027220 NCBI Caenorhabditis elegans Rho GTPase Activating protein family member (rga-1) (rga-1) mRNA, complete cds. 11/11 None
W02B12.8 ENSEMBL cdna:known chromosome:CEL140:II:11464799:11468558:1 gene:W02B12.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002911 1/11 Cross Hyb Matching Probes None
SNAP00000002913 8/11 Cross Hyb Matching Probes None
GENEFINDER00000002928 8/11 Cross Hyb Matching Probes None
GENEFINDER00000002930 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11464798-11468408(+) 100.0 100.0
Public Domain and Genome References
Ensembl W02B12.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91403 Hypothetical protein W02B12.8a [Caenorhabditis elegans] ref|NP_001022390.1| Rho GTPase Activating protein family member (rga-1) [Caenorhabditis elegans] 0.0
blast CAE59500 Hypothetical protein CBG02886 [Caenorhabditis briggsae] 0.0
blast CAI70416 Hypothetical protein W02B12.8b [Caenorhabditis elegans] ref|NP_001022391.1| Rho GTPase Activating protein family member (rga-1) [Caenorhabditis elegans] 1.0E-138
blast CAA91403 Hypothetical protein W02B12.8a [Caenorhabditis elegans] ref|NP_001022390.1| Rho GTPase Activating protein family member (rga-1) [Caenorhabditis elegans] 1.0E-138
blast CAI70416 Hypothetical protein W02B12.8b [Caenorhabditis elegans] ref|NP_001022391.1| Rho GTPase Activating protein family member (rga-1) [Caenorhabditis elegans] 1.0E-137
blast CAE59500 Hypothetical protein CBG02886 [Caenorhabditis briggsae] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.1E-57
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.1E-57
Sequence
Target Sequence 
>C. ELEGANS:193088_AT
tcaacctctgccaacacaacagtttggagttcctctcgagttcatcctgtctcactgtgg
tggaaacatccctccaatcgttgaccagctcatcgagtatctggaagctcacgcgttgac
aatggaaggagttttcaggaaaagtgctaatattggaagtataaagaggctacaggatag
aattaataaaggcgaaaaaattgatttcgaaaatgatccagagtacaaggacaacgaata
cgtggcttccctgcatgcttctgtacttttgaagacgttcttcaggagcctcggagagcc
cctaacgaccaataggctttatccgaaacttgcggctctttcagaagtatcgaaaaccga
gaaaagcgccgccgtgaaagaatttgtgaagcttctgcctcgtgaaaactacattcttct
gaaaacagtcatcaaattcctaactcgagtcgccgaaaacagcaaagtgaatctgatgac
tgcaaacaatttgagtgtcgttttcggtccaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACCTCTGCCAACACAACAGTTT 346 631 729 Antisense
AGTTTGGAGTTCCTCTCGAGTTCAT 344 63 749 Antisense
TTCATCCTGTCTCACTGTGGTGGAA 286 687 769 Antisense
TGGAAACATCCCTCCAATCGTTGAC 81 547 789 Antisense
ATCGTTGACCAGCTCATCGAGTATC 595 35 805 Antisense
GGACAACGAATACGTGGCTTCCCTG 679 525 957 Antisense
GAGCCCCTAACGACCAATAGGCTTT 45 387 1024 Antisense
TTATCCGAAACTTGCGGCTCTTTCA 104 681 1047 Antisense
GAAGCTTCTGCCTCGTGAAAACTAC 24 343 1116 Antisense
CATCAAATTCCTAACTCGAGTCGCC 300 213 1158 Antisense
TTGAGTGTCGTTTTCGGTCCAAATT 538 703 1219 Antisense
Sequence Source Affymetrix Proprietary Database