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[193087_s_at] protein tyrosine phosphatase

Description B0244.2 /REP_DB=WormBase Gene ID /WP=CE20447 /GEN=ida-1 /TR=Q09962 /GB=AAD31046.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 78      6grp_total > 48      4grp_total > 23      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3001
1 2 3 4 range
A 4008.1
(3)
P 		1450.5
(-2.1)
P 		1025.5
(-3)
P 		3277.7
(1.5)
P 		2983
B 4026.1
(3)
P 		1399
(-2.4)
P 		1130.8
(-3)
P 		3328
(1.6)
P 		2895
C 3738.3
(3)
P 		1567.7
(-1.9)
P 		1080.4
(-3)
P 		3414.9
(2.3)
P 		2658
avr 3924.2
(3) 		1472.4
(-2.2) 		1078.9
(-3) 		3340.2
(1.8) 		2845

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1141
1 2 3 4 5 6 range
A 2031.7
(2)
P 		1919.5
(1.4)
P 		1084.4
(-3)
P 		1450.1
(-1.1)
P 		1527.3
(-0.7)
P 		2224.9
(3)
P 		1141
B 1892.8
(2.8)
P 		1551.1
(0.1)
P 		1161.6
(-3)
P 		1533.6
(-0)
P 		1473.6
(-0.5)
P 		1917.4
(3)
P 		756
C 1915.6
(2.3)
P 		1480.1
(-1.8)
P 		1626.5
(-0.4)
P 		1356.2
(-3)
P 		1673.4
(-0)
P 		1991.9
(3)
P 		636
avr 1946.7
(2.2) 		1650.2
(-0.1) 		1290.8
(-3) 		1446.6
(-1.8) 		1558.1
(-0.9) 		2044.7
(3) 		754
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1197
1 2 3 4 range
A 1459.3
(3)
P 		314.9
(-2.8)
P 		268.1
(-3)
P 		479.8
(-1.9)
P 		1191
B 1283.9
(3)
P 		345.5
(-2.5)
P 		262
(-3)
P 		709.2
(-0.4)
P 		1022
C 1237.5
(3)
P 		450.7
(-2.5)
P 		376.6
(-3)
P 		575.8
(-1.6)
P 		861
avr 1326.9
(3) 		370.4
(-2.6) 		302.2
(-3) 		588.3
(-1.3) 		1025

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 479
1 2 3 4 5 6 range
A 374.5
(-1.1)
P 		682.7
(3)
P 		236.2
(-3)
P 		367.8
(-1.2)
P 		460.9
(0)
P 		541.7
(1.1)
P 		447
B 658.6
(2.2)
P 		516.3
(0.2)
P 		282.1
(-3)
P 		406.2
(-1.3)
P 		598.7
(1.4)
P 		715
(3)
P 		433
C 710
(3)
P 		451.6
(-0.5)
P 		414
(-1.1)
P 		272.7
(-3)
P 		541.5
(0.7)
P 		666.8
(2.4)
P 		437
avr 581
(1.9) 		550.2
(1.3) 		310.8
(-3) 		348.9
(-2.3) 		533.7
(1) 		641.2
(3) 		330
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193087_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6055
Sequence Type Exemplar sequence
Representative Public ID B0244.2 NCBI
Target Description B0244.2 /REP_DB=WormBase Gene ID /WP=CE20447 /GEN=ida-1 /TR=Q09962 /GB=AAD31046.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065844 NCBI Caenorhabditis elegans related to Islet cell Diabetes Autoantigen family member (ida-1) (ida-1) mRNA, complete cds. 11/11 None
SNAP00000015996 ENSEMBL cdna:SNAP chromosome:CEL140:III:5761082:5765533:1 11/11 None
GENEFINDER00000015998 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5761094:5765533:1 11/11 None
B0244.2 ENSEMBL cdna:known chromosome:CEL140:III:5755487:5765764:1 gene:B0244.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5755541-5765532(+) 100.0 100.0
Public Domain and Genome References
Gene Title protein tyrosine phosphatase
Gene Symbol ida-1
Ensembl B0244.2
Entrez Gene 175807 Entrez gene
SwissProt Q09962 EMBL-EBI
WormBase CE31867 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4289 subtilase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
5001 transmembrane receptor protein tyrosine phosphatase activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD31046 Related to islet cell diabetes autoantigen protein 1 [Caenorhabditis elegans] emb|CAB52188.1| IDA-1 protein [Caenorhabditis elegans] ref|NP_498245.2| related to Islet cell Diabetes Autoantigen family member (ida-1) [Caenorhabditis elegans] gb|AAK14908.1| IA2 [Caenorhabditis elegans] 0.0
blast CAE64402 Hypothetical protein CBG09094 [Caenorhabditis briggsae] 0.0
blast A88466 protein B0244.2 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.7E-78
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 8.5E-75
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.7E-78
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498245.2 1 399-421
B0244.2 1 399-421
SNAP00000015996 1 396-418
GENEFINDER00000015998 1 392-414
Sequence
Target Sequence 
>C. ELEGANS:193087_S_AT
gtctacattgctgctcaaactccagctagctcccagatcgcagccttctggcaaacgatc
tggcaacacggtgtctgccttgtcgtaaacctctccacaccggaggagtgcaagcaagag
aagaactattggccggatactggaagtgaggttcacggagcatttgaaattcatcttgtt
tcggagcacatttggtctgatgactacctcgttcgatccttctacctcaagaatctccaa
aacagtcaaacacgaacaatcacccaattccactacctttcatggcaaaaagaatcaaca
ccaacgagtgctaagagcattttggagttccgtcgtaaagtgaacaagtcatatcgcgga
cgatcatccgcagtgctcgttcactcttgggatggctcaggtcgtacaggagtatattgt
gcagttgatgttctttgtgcacgccttcttcgtggaatcaggcaaattgatgtcgtcgcc
accg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTACATTGCTGCTCAAACTCCAG 488 469 1576 Antisense
ATCGCAGCCTTCTGGCAAACGATCT 299 35 1612 Antisense
AAACGATCTGGCAACACGGTGTCTG 438 125 1628 Antisense
TAAACCTCTCCACACCGGAGGAGTG 56 639 1661 Antisense
TTGGTCTGATGACTACCTCGTTCGA 297 709 1767 Antisense
CCAATTCCACTACCTTTCATGGCAA 378 277 1839 Antisense
ATCGCGGACGATCATCCGCAGTGCT 411 37 1928 Antisense
TTCACTCTTGGGATGGCTCAGGTCG 682 671 1955 Antisense
GCAGTTGATGTTCTTTGTGCACGCC 149 313 1996 Antisense
GCACGCCTTCTTCGTGGAATCAGGC 405 313 2014 Antisense
AGGCAAATTGATGTCGTCGCCACCG 417 53 2035 Antisense
Sequence Source Affymetrix Proprietary Database