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[193086_at] Uncharacterized protein family UPF0028

Description M110.7 /REP_DB=WormBase Gene ID /WP=CE03510 /TR=SW:Q21534 /GB=CAA90264.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Uncharacterized protein family UPF0028
Cluster 6grp_total > 79      4grp_total > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 53.9
(3)
A 		35.3
(0.2)
A 		17.9
(-2.5)
A 		14.5
(-3)
A 		39
B 24.4
(-1)
A 		12.3
(-3)
A 		48.3
(3)
A 		13.4
(-2.8)
A 		36
C 8.6
(-3)
A 		24.2
(-0.3)
A 		43.3
(3)
A 		19.3
(-1.1)
A 		35
avr 29
(0.8) 		23.9
(-0.6) 		36.5
(3) 		15.7
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 9.6
(-3)
A 		27.4
(-1.5)
A 		11.9
(-2.8)
A 		29.1
(-1.4)
A 		55.8
(0.8)
A 		83.1
(3)
A 		74
B 45.3
(-0.7)
A 		25
(-2.2)
A 		26.6
(-2.1)
A 		14.8
(-3)
A 		52.5
(-0.1)
A 		93.2
(3)
A 		78
C 8.6
(-3)
A 		57.4
(1.9)
A 		14.7
(-2.4)
A 		16.5
(-2.2)
A 		41.3
(0.3)
A 		68.3
(3)
A 		60
avr 21.2
(-2.7) 		36.6
(-1.2) 		17.7
(-3) 		20.1
(-2.8) 		49.9
(0) 		81.5
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.6
(3)
A 		7.7
(-1.1)
A 		4.7
(-2.1)
A 		2.1
(-3)
A 		18
B 7.8
(0.5)
A 		3
(-2.9)
A 		11.2
(3)
A 		2.9
(-3)
A 		8
C 2.9
(-3)
A 		6.9
(-1)
A 		15.1
(3)
A 		3.2
(-2.9)
A 		12
avr 10.1
(2.8) 		5.9
(-0.5) 		10.3
(3) 		2.7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 1.8
(-3)
A 		9.8
(-0.4)
A 		2.6
(-2.7)
A 		7.4
(-1.2)
A 		16.8
(1.9)
A 		20.2
(3)
A 		18
B 15.8
(-0.7)
A 		8.3
(-2.1)
A 		6.5
(-2.5)
A 		3.9
(-3)
A 		21.3
(0.4)
A 		34.8
(3)
A 		31
C 3.2
(-3)
A 		17.5
(1.4)
A 		3.7
(-2.8)
A 		3.3
(-3)
A 		13.4
(0.1)
A 		22.9
(3)
A 		20
avr 6.9
(-2.3) 		11.9
(-0.9) 		4.3
(-3) 		4.9
(-2.8) 		17.2
(0.6) 		26
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193086_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2733
Sequence Type Exemplar sequence
Representative Public ID M110.7 NCBI
Target Description M110.7 /REP_DB=WormBase Gene ID /WP=CE03510 /TR=SW:Q21534 /GB=CAA90264.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Uncharacterized protein family UPF0028
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063333(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063333 NCBI Caenorhabditis elegans M110.7 (M110.7) mRNA, complete cds. 11/11 None
SNAP00000018020 ENSEMBL cdna:SNAP chromosome:CEL140:II:8235778:8237125:1 11/11 None
GENEFINDER00000018027 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8235917:8237125:1 11/11 None
M110.7 ENSEMBL cdna:known chromosome:CEL140:II:8233278:8237125:1 gene:M110.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8233274-8237122(+) 100.0 100.0
Public Domain and Genome References
Gene Title Uncharacterized protein family UPF0028
Ensembl M110.7
Entrez Gene 187474 Entrez gene
SwissProt Q21534 EMBL-EBI
WormBase CE03510 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
45735 nutrient reservoir activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90264 Hypothetical protein M110.7 [Caenorhabditis elegans] emb|CAA90246.1| Hypothetical protein M110.7 [Caenorhabditis elegans] ref|NP_495734.1| M110.7 [Caenorhabditis elegans] sp|Q21534|YVL7_CAEEL Hypothetical UPF0028 protein M110.7 in chromosome II 0.0
blast CAE57663 Hypothetical protein CBG00653 [Caenorhabditis briggsae] 0.0
blast CAA90264 Hypothetical protein M110.7 [Caenorhabditis elegans] emb|CAA90246.1| Hypothetical protein M110.7 [Caenorhabditis elegans] ref|NP_495734.1| M110.7 [Caenorhabditis elegans] sp|Q21534|YVL7_CAEEL Hypothetical UPF0028 protein M110.7 in chromosome II 1.0E-177
blast CAE62764 Hypothetical protein CBG06931 [Caenorhabditis briggsae] 1.0E-172
blast CAE57663 Hypothetical protein CBG00653 [Caenorhabditis briggsae] 1.0E-172
blast CAE57663 Hypothetical protein CBG00653 [Caenorhabditis briggsae] 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 8.2E-60
Pfam IPR002641 EMBL-EBI Patatin 1.3E-41
Pfam IPR002641 EMBL-EBI Patatin 8.2E-60
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 1.3E-17
Sequence
Target Sequence 
>C. ELEGANS:193086_AT
ttatgtggcctgttgttcgtagttccatgtctattgctggttatgtaccgcccatttgtg
atccacaggatggtcacttgttattagatggagcatatgtcaacaatttaccagcagata
ttatgaggtctcttggtgctaatgtagtgattgcaattgatgttggaatgtcagatgata
acactaatttgagaaattatggattttcaataagtggaacgtggtgtttattcaaacgtt
ggtggccatttggagaagaacttcgcgttttgaatatgaacgaagtacagaatcgtctcg
cgtacgtttgctgtgtcaatcagatggaaattgtcaaaaatgctcaatattgttattatg
tcaaacttccgattgaaagctttggtatcttcgatttctcaaaattcgaccaggcagctc
aaattggatatgacatcactaagcaaaagatggaagaattctttgaggactcagtggcca
ccagaagaaagttgcttggatgtgcaagaaacgtccgacaaactcctcaaaaatcgaaaa
atgataacattttgtcatttgtcaatatgcctgttcttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATGTGGCCTGTTGTTCGTAGTTC 240 679 2045 Antisense
GTTCGTAGTTCCATGTCTATTGCTG 633 441 2059 Antisense
TATTGCTGGTTATGTACCGCCCATT 126 665 2076 Antisense
TACCGCCCATTTGTGATCCACAGGA 310 647 2090 Antisense
GAGGTCTCTTGGTGCTAATGTAGTG 577 399 2169 Antisense
ACAGAATCGTCTCGCGTACGTTTGC 370 105 2331 Antisense
AGCTTTGGTATCTTCGATTTCTCAA 594 77 2422 Antisense
TTCTCAAAATTCGACCAGGCAGCTC 709 689 2440 Antisense
TTGAGGACTCAGTGGCCACCAGAAG 449 701 2507 Antisense
GCAAGAAACGTCCGACAAACTCCTC 486 321 2548 Antisense
ATTTGTCAATATGCCTGTTCTTCCA 132 19 2601 Antisense
Sequence Source Affymetrix Proprietary Database