[Home] | [Total List]

[193084_s_at]

Description T04C10.2 /REP_DB=WormBase Gene ID /WP=CE21148 /CHR=X /FEA=Sanger Annotation /DEF=Yeast hypothetical protein L8167.6 like (HINXTON) TR:Q22153 protein_id:CAA93754.1
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 73      6grp_total > 29      4grp_total > 09      6grp_cgc > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 551
1 2 3 4 range
A 529.3
(-3)
P 		541.9
(-2.8)
P 		551.9
(-2.7)
P 		1018.4
(3)
P 		489
B 475.5
(-3)
P 		566.6
(-2)
P 		572
(-1.9)
P 		1026.9
(3)
P 		551
C 546.6
(-3)
P 		643.4
(-1.6)
P 		629.6
(-1.8)
P 		969
(3)
P 		422
avr 517.1
(-3) 		584
(-2.2) 		584.5
(-2.2) 		1004.8
(3) 		488

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 492.7
(0.1)
P 		654.5
(3)
P 		322.6
(-3)
P 		547.8
(1.1)
P 		617
(2.3)
P 		586.9
(1.8)
P 		332
B 502.3
(1.5)
P 		458.1
(-0.7)
P 		437.4
(-1.7)
P 		475.8
(0.2)
P 		531.5
(3)
P 		411
(-3)
P 		121
C 728
(3)
P 		481.8
(-0.7)
P 		542.4
(0.2)
P 		423.1
(-1.6)
P 		635.3
(1.6)
P 		329.6
(-3)
P 		398
avr 574.3
(2.2) 		531.5
(0.6) 		434.1
(-3) 		482.2
(-1.2) 		594.6
(3) 		442.5
(-2.7) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 192.7
(3)
P 		117.6
(-3)
P 		144.3
(-0.9)
P 		149.1
(-0.5)
P 		75
B 151.6
(-1.7)
P 		139.9
(-2.5)
P 		132.6
(-3)
P 		218.8
(3)
P 		86
C 180.9
(-1.1)
P 		185
(-0.7)
P 		219.5
(3)
P 		163.4
(-3)
P 		56
avr 175.1
(2.6) 		147.5
(-3) 		165.5
(0.6) 		177.1
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 90.8
(-2.2)
P 		232.8
(3)
P 		70.3
(-3)
P 		138.9
(-0.5)
P 		186.2
(1.3)
P 		142.9
(-0.3)
P 		163
B 174.8
(0.8)
P 		152.5
(-0.5)
P 		106.2
(-3)
P 		126
(-1.9)
P 		215.9
(3)
P 		153.3
(-0.4)
P 		110
C 269.8
(3)
P 		147
(-1)
P 		138
(-1.3)
P 		85.1
(-3)
P 		205.6
(0.9)
P 		110.3
(-2.2)
P 		185
avr 178.5
(1.5) 		177.4
(1.5) 		104.8
(-3) 		116.7
(-2.3) 		202.6
(3) 		135.5
(-1.1) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193084_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17733
Sequence Type Exemplar sequence
Representative Public ID T04C10.2 NCBI
Target Description T04C10.2 /REP_DB=WormBase Gene ID /WP=CE21148 /CHR=X /FEA=Sanger Annotation /DEF=Yeast hypothetical protein L8167.6 like (HINXTON) TR:Q22153 protein_id:CAA93754.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078057(11), NM_078058(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078057 NCBI Caenorhabditis elegans EPsiN (endocytic protein) homolog family member (epn-1) (epn-1) mRNA, complete cds. 11/11 None
NM_078058 NCBI Caenorhabditis elegans EPsiN (endocytic protein) homolog family member (epn-1) (epn-1) mRNA, complete cds. 11/11 None
SNAP00000038430 ENSEMBL cdna:SNAP chromosome:CEL140:X:14816544:14818412:-1 11/11 None
GENEFINDER00000038436 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14816544:14818412:-1 11/11 None
T04C10.2b.1 ENSEMBL cdna:known chromosome:CEL140:X:14815719:14818425:-1 gene:T04C10.2 11/11 None
T04C10.2b.2 ENSEMBL cdna:known chromosome:CEL140:X:14815734:14818430:-1 gene:T04C10.2 11/11 None
T04C10.2a ENSEMBL cdna:known chromosome:CEL140:X:14816544:14818412:-1 gene:T04C10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14816543-14818930(-) 94.4 100.0
Public Domain and Genome References
Ensembl T04C10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35825 Hypothetical protein T04C10.2b [Caenorhabditis elegans] ref|NP_510458.1| EPsiN (endocytic protein) homolog family member (epn-1) [Caenorhabditis elegans] 0.0
blast T24447 hypothetical protein T04C10.2 - Caenorhabditis elegans 0.0
blast CAC35824 Hypothetical protein T04C10.2a [Caenorhabditis elegans] ref|NP_510459.1| EPsiN (endocytic protein) homolog family member (epn-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 0.0032
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 2.0E-59
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 1.8
Sequence
Target Sequence 
>C. ELEGANS:193084_S_AT
cgttgggtgttggtgagctggtcagtggaaacaacgatcaaccatcgtcatcgtcggctt
ggggaatgaatgatccatggggtgctccacaagcttctgcctctctcaacacaaacgatc
aaatgtttgctaactcgatgtccaacaacgatccatgggctacatcgacagttgctcaac
cagttgccgctaccgctccaaactctgatccgtttgcttcttgggatgcaccggctccag
ctgcaactactccatcaacaatgccaacgagcagttcgtttgatcttctcggaggagatc
tgctctccccaactaactcattgagcgccaacatcaacactaacaactccacaaatggta
ccagaaagactccagaaaacttccttggggagaactctaaccttgtcaacttggacaact
tgctgggaagcggaactccaagcaccacaggtggaaacccattccttaccggagccgctc
cagcgaacgccaatccatttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTGGGTGTTGGTGAGCTGGTCAG 377 247 1187 Antisense
AACGATCAACCATCGTCATCGTCGG 219 145 1219 Antisense
TGAATGATCCATGGGGTGCTCCACA 580 575 1253 Antisense
AACTCGATGTCCAACAACGATCCAT 218 141 1318 Antisense
CATGGGCTACATCGACAGTTGCTCA 626 209 1340 Antisense
TCCGTTTGCTTCTTGGGATGCACCG 335 595 1395 Antisense
ACTACTCCATCAACAATGCCAACGA 472 101 1432 Antisense
GAGCAGTTCGTTTGATCTTCTCGGA 479 389 1455 Antisense
TCTCCCCAACTAACTCATTGAGCGC 164 611 1490 Antisense
GAACTCTAACCTTGTCAACTTGGAC 377 341 1578 Antisense
CTCCAGCGAACGCCAATCCATTTGC 342 235 1664 Antisense
Sequence Source Affymetrix Proprietary Database