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[193081_at]

Description F08F3.2 /REP_DB=WormBase Gene ID /WP=CE09258 /TR=SW:Q22949 /GB=AAB04876.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glycerol-3-phosphate acyltransferase
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 84      6grp_total > 67      4grp_total > 63      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 457
1 2 3 4 range
A 744.3
(3)
P 		407.1
(-3)
P 		515.8
(-1.1)
P 		422.1
(-2.7)
P 		337
B 745.7
(3)
P 		490.8
(-0.5)
P 		605.4
(1.1)
P 		311.2
(-3)
P 		435
C 767.8
(3)
P 		382.4
(-2.8)
P 		520.5
(-0.7)
P 		365.9
(-3)
P 		402
avr 752.6
(3) 		426.8
(-2.1) 		547.2
(-0.2) 		366.4
(-3) 		386

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 362
1 2 3 4 5 6 range
A 563.2
(-1.7)
P 		537.6
(-2.3)
P 		564.9
(-1.6)
P 		594.2
(-0.9)
P 		508.8
(-3)
P 		756
(3)
P 		247
B 602
(-1)
P 		497.4
(-2.8)
P 		489
(-3)
P 		577.6
(-1.4)
P 		529.9
(-2.3)
P 		822.5
(3)
P 		334
C 566.7
(0)
P 		460.9
(-3)
P 		572.6
(0.2)
P 		601
(1)
P 		514.5
(-1.5)
P 		670.5
(3)
P 		210
avr 577.3
(-1.1) 		498.6
(-3) 		542.2
(-2) 		590.9
(-0.8) 		517.7
(-2.5) 		749.7
(3) 		251
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 271
(3)
P 		88.4
(-2.2)
P 		134.8
(-0.9)
P 		61.8
(-3)
P 		209
B 237.8
(3)
P 		121.2
(-1.1)
P 		140.3
(-0.4)
P 		66.3
(-3)
P 		172
C 254.2
(3)
P 		109.9
(-1.5)
P 		181.4
(0.7)
P 		61.7
(-3)
P 		193
avr 254.3
(3) 		106.5
(-1.6) 		152.2
(-0.2) 		63.3
(-3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 103.8
(-3)
P 		191.2
(3)
P 		123
(-1.7)
P 		150.7
(0.2)
P 		153.5
(0.4)
P 		184.1
(2.5)
P 		87
B 209.5
(-0.1)
P 		165.6
(-1.5)
P 		118.7
(-3)
P 		153
(-1.9)
P 		215.3
(0.1)
P 		306.7
(3)
P 		188
C 210
(2.2)
P 		140.6
(-1.9)
P 		145.7
(-1.6)
P 		120.9
(-3)
P 		166.5
(-0.4)
P 		224.5
(3)
P 		104
avr 174.4
(-0.5) 		165.8
(-1) 		129.1
(-3) 		141.5
(-2.3) 		178.4
(-0.3) 		238.4
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193081_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12427
Sequence Type Exemplar sequence
Representative Public ID F08F3.2 NCBI
Target Description F08F3.2 /REP_DB=WormBase Gene ID /WP=CE09258 /TR=SW:Q22949 /GB=AAB04876.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glycerol-3-phosphate acyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028598(11), NM_001028599(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028598 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-6) (acl-6) mRNA, complete cds. 11/11 None
NM_001028599 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-6) (acl-6) mRNA, complete cds. 11/11 None
SNAP00000026685 ENSEMBL cdna:SNAP chromosome:CEL140:V:5433229:5436761:1 11/11 None
GENEFINDER00000026688 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5433229:5436761:1 11/11 None
F08F3.2a ENSEMBL cdna:known chromosome:CEL140:V:5433197:5436865:1 gene:F08F3.2 11/11 None
F08F3.2b ENSEMBL cdna:known chromosome:CEL140:V:5433753:5436761:1 gene:F08F3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5433228-5436761(+) 100.0 100.0
Public Domain and Genome References
Ensembl F08F3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04876 Acyltransferase-like protein 6, isoform a [Caenorhabditis elegans] ref|NP_001023769.1| ACyLtransferase-like family member (acl-6) [Caenorhabditis elegans] sp|Q22949|PLSB_CAEEL Probable glycerol-3-phosphate acyltransferase, mitochondrial precursor (GPAT) 0.0
blast CAE64630 Hypothetical protein CBG09390 [Caenorhabditis briggsae] 0.0
blast AAQ91904 Acyltransferase-like protein 6, isoform b [Caenorhabditis elegans] ref|NP_001023770.1| ACyLtransferase-like family member (acl-6) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 3.3E-34
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 6.9E-32
Sequence
Target Sequence 
>C. ELEGANS:193081_AT
ttgctctgacaatcgtatcgcgtccgtccggtaccaagctatcgattgatcaaatcgtag
aggatgcactctccctgtgtgactggcttcaatttgaattcatgttttgtcgaccatgcg
acagtctccgcgagcttgtacacaacgttcttggacaaaaggaatggtcggatccaattc
acggatttctcagatcggaaattgaagatgacggatttctggatgctggaggcgctctaa
atagtggaactctacgggtccgagacgcaaaatcacgcgaaacattgcaatttttcgcga
atcttgttcgcccattcgttcaatcgctgtatctcatttcttcattcgtcgtttctgaaa
aatgtccaacggagccaacatcagataacaatattatccgtcaactatgtcagcaatcac
ttgccggagatattgatctcccgttcgcgccgcttttggaatcgatcaattcggattcat
tcaaaaatgcgcttcgagtcttgaaagacaaaggattattgcaacgaagcacaccaaatt
ccaccgccaggagcggaaactctcgtcttgccgaattgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTCTGACAATCGTATCGCGTCC 455 699 1556 Antisense
ATCGTAGAGGATGCACTCTCCCTGT 160 35 1609 Antisense
TCCCTGTGTGACTGGCTTCAATTTG 562 597 1627 Antisense
TCCGCGAGCTTGTACACAACGTTCT 358 595 1682 Antisense
GGATTTCTGGATGCTGGAGGCGCTC 118 509 1768 Antisense
TGGAACTCTACGGGTCCGAGACGCA 137 533 1800 Antisense
TTTCGCGAATCTTGTTCGCCCATTC 64 671 1848 Antisense
TCAATCGCTGTATCTCATTTCTTCA 519 633 1875 Antisense
ATCCGTCAACTATGTCAGCAATCAC 52 37 1951 Antisense
GCAACGAAGCACACCAAATTCCACC 622 315 2076 Antisense
GAAACTCTCGTCTTGCCGAATTGAT 515 357 2111 Antisense
Sequence Source Affymetrix Proprietary Database