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[193079_s_at] 60S ribosomal protein L37 /// ribosomal protein L37

Description C54C6.1 /REP_DB=WormBase Gene ID /WP=CE05493 /GEN=rpl-37 /TR=SW:P49622 /GB=CAB00854.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=60S ribosomal protein L37
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 51      4grp_total > 17      6grp_highest_sub > 03      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15336
1 2 3 4 range
A 24400.6
(-3)
P 		34965.8
(1.5)
P 		31324.2
(-0.1)
P 		38534.6
(3)
P 		14134
B 26829.7
(-3)
P 		27860.3
(-2.1)
P 		31354.8
(0.7)
P 		34100.8
(3)
P 		7271
C 24118.3
(-3)
P 		25633.8
(-2.4)
P 		24594.7
(-2.8)
P 		39453.8
(3)
P 		15336
avr 25116.2
(-3) 		29486.6
(-0.9) 		29091.2
(-1.1) 		37363.1
(3) 		12247

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9945
1 2 3 4 5 6 range
A 29944.6
(3)
P 		23441.2
(-2.3)
P 		29942.9
(3)
P 		26073.6
(-0.1)
P 		22538
(-3)
P 		23037.4
(-2.6)
P 		7407
B 21871.3
(-1.3)
P 		23950.7
(0.7)
P 		26445.6
(3)
P 		24077
(0.8)
P 		19999.8
(-3)
P 		20726.3
(-2.3)
P 		6446
C 21160.5
(-3)
P 		24914.7
(0.9)
P 		25969.3
(2)
P 		26941
(3)
P 		23400.8
(-0.7)
P 		23089.7
(-1)
P 		5781
avr 24325.5
(-0.4) 		24102.2
(-0.7) 		27452.6
(3) 		25697.2
(1.1) 		21979.5
(-3) 		22284.5
(-2.7) 		5473
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3244
1 2 3 4 range
A 8884.2
(3)
P 		7590.1
(0.6)
P 		8188.8
(1.7)
P 		5640.7
(-3)
P 		3244
B 8555.8
(3)
P 		6880.8
(-3)
P 		7265.6
(-1.6)
P 		7266.9
(-1.6)
P 		1675
C 7983.8
(1.2)
P 		7369.9
(-0.8)
P 		8572
(3)
P 		6652.5
(-3)
P 		1920
avr 8474.6
(3) 		7280.3
(-0.7) 		8008.8
(1.6) 		6520
(-3) 		1955

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2919
1 2 3 4 5 6 range
A 5520.1
(-3)
P 		8336.9
(3)
P 		6520.9
(-0.9)
P 		6612.9
(-0.7)
P 		6801
(-0.3)
P 		5608.9
(-2.8)
P 		2817
B 7610.1
(1.2)
P 		7972.2
(2.5)
P 		6421.8
(-2.8)
P 		6377.2
(-3)
P 		8125.6
(3)
P 		7728.8
(1.6)
P 		1748
C 7843.3
(3)
P 		7602.2
(2.4)
P 		6609.6
(-0.1)
P 		5417.9
(-3)
P 		7572.2
(2.3)
P 		7729.5
(2.7)
P 		2425
avr 6991.2
(-0.2) 		7970.4
(3) 		6517.4
(-1.8) 		6136
(-3) 		7499.6
(1.5) 		7022.4
(-0.1) 		1834
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193079_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7865
Sequence Type Exemplar sequence
Representative Public ID C54C6.1 NCBI
Target Description C54C6.1 /REP_DB=WormBase Gene ID /WP=CE05493 /GEN=rpl-37 /TR=SW:P49622 /GB=CAB00854.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=60S ribosomal protein L37
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064671(11), NM_065326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064671 NCBI Caenorhabditis elegans W01D2.1 (W01D2.1) mRNA, complete cds. 11/11 None
NM_065326 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-37) (rpl-37) mRNA, complete cds. 11/11 None
GENEFINDER00000015975 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14815408:14815986:1 11/11 None
SNAP00000035305 ENSEMBL cdna:SNAP chromosome:CEL140:III:3528625:3528900:1 11/11 None
GENEFINDER00000035316 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3528625:3528900:1 11/11 None
W01D2.1.2 ENSEMBL cdna:known chromosome:CEL140:II:14815406:14816074:1 gene:W01D2.1 11/11 None
W01D2.1.1 ENSEMBL cdna:known chromosome:CEL140:II:14815408:14816454:1 gene:W01D2.1 11/11 None
W01D2.1.3 ENSEMBL cdna:known chromosome:CEL140:II:14815408:14816102:1 gene:W01D2.1 11/11 None
W01D2.1.4 ENSEMBL cdna:known chromosome:CEL140:II:14815408:14816454:1 gene:W01D2.1 11/11 None
C54C6.1.2 ENSEMBL cdna:known chromosome:CEL140:III:3528402:3528900:1 gene:C54C6.1 11/11 None
C54C6.1.1 ENSEMBL cdna:known chromosome:CEL140:III:3528530:3528900:1 gene:C54C6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14815404-14815983(+) 99.64 99.64
chrIII:3528624-3528900(+) 100.0 100.0
Public Domain and Genome References
Gene Title 60S ribosomal protein L37
ribosomal protein L37
Gene Symbol rpl-37
Ensembl W01D2.1
C54C6.1
Entrez Gene 175141 Entrez gene
175460 Entrez gene
SwissProt P49622 EMBL-EBI
O62388 EMBL-EBI
WormBase CE05493 Wormbase
CE18312 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259612_AT 60S ribosomal protein L37 (RPL37B) at
ATH1-121501:259612_AT 60S ribosomal protein L37 (RPL37B) at
CANINE:1605043_AT similar to ribosomal protein L37 cfa
CANINE:1587876_S_AT similar to ribosomal protein L37 cfa
CANINE_2:CFA.10237.2.S1_AT similar to ribosomal protein L37 cfa
CANINE_2:CFAAFFX.15158.1.S1_AT similar to ribosomal protein L37 cfa
CANINE_2:CFAAFFX.26700.1.S1_X_AT similar to ribosomal protein L37 cfa
CANINE:1605043_AT similar to ribosomal protein L37 cfa
CANINE:1587876_S_AT similar to ribosomal protein L37 cfa
CANINE_2:CFA.10237.2.S1_AT similar to ribosomal protein L37 cfa
CANINE_2:CFAAFFX.15158.1.S1_AT similar to ribosomal protein L37 cfa
CANINE_2:CFAAFFX.26700.1.S1_X_AT similar to ribosomal protein L37 cfa
DROSOPHILA_2:1628061_AT Ribosomal protein L37a dm
DROSGENOME1:145105_AT Ribosomal protein L37a dm
DROSOPHILA_2:1628061_AT Ribosomal protein L37a dm
DROSGENOME1:145105_AT Ribosomal protein L37a dm
CHICKEN:GGA.3410.1.S1_AT ribosomal protein L37 gga
CHICKEN:GGA.3410.1.S1_AT ribosomal protein L37 gga
HG-U95AV2:33656_AT ribosomal protein L37 hs
PLASMODIUM_ANOPHELES:200092_S_AT ribosomal protein L37 hs
HG-U133A_2:200092_S_AT ribosomal protein L37 hs
HG-FOCUS:200092_S_AT ribosomal protein L37 hs
HG-U133_PLUS_2:200092_S_AT ribosomal protein L37 hs
HG-U133B:200092_S_AT ribosomal protein L37 hs
HG-U133A:200092_S_AT ribosomal protein L37 hs
U133_X3P:200092_S_AT ribosomal protein L37 hs
HU35KSUBB:RC_W73010_AT ribosomal protein L37 hs
HU35KSUBB:RC_R49047_AT ribosomal protein L37 hs
HU35KSUBC:RC_AA456673_AT ribosomal protein L37 hs
HU35KSUBD:RC_AA262456_AT ribosomal protein L37 hs
U133_X3P:HS.80545.1.A3_3P_AT ribosomal protein L37 hs
U133_X3P:HS.80545.1.A2_3P_AT ribosomal protein L37 hs
U133_X3P:HS.80545.1.A1_3P_AT ribosomal protein L37 hs
U133_X3P:HS.179779.1.S1_3P_A_AT ribosomal protein L37 hs
HG-U133_PLUS_2:224763_AT ribosomal protein L37 hs
HG-U133B:224763_AT ribosomal protein L37 hs
HG-U133_PLUS_2:224766_AT ribosomal protein L37 hs
HG-U133B:224766_AT ribosomal protein L37 hs
HG-U133_PLUS_2:224767_AT ribosomal protein L37 hs
HG-U133B:224767_AT ribosomal protein L37 hs
HG-U95B:52614_AT ribosomal protein L37 hs
HG-U95E:68359_AT ribosomal protein L37 hs
HG-U95D:82154_AT ribosomal protein L37 hs
U133_X3P:HS2.436389.1.A1_3P_A_AT Ribosomal protein L37 hs
HG-U133_PLUS_2:1565947_A_AT Ribosomal protein L37 hs
HG-U133_PLUS_2:1566337_X_AT Ribosomal protein L37 hs
HG-U95E:79127_AT Ribosomal protein L37 hs
HU35KSUBD:RC_AA418293_AT Ribosomal protein L37 hs
HG-U95AV2:33656_AT ribosomal protein L37 hs
PLASMODIUM_ANOPHELES:200092_S_AT ribosomal protein L37 hs
HG-U133A_2:200092_S_AT ribosomal protein L37 hs
HG-FOCUS:200092_S_AT ribosomal protein L37 hs
HG-U133_PLUS_2:200092_S_AT ribosomal protein L37 hs
HG-U133B:200092_S_AT ribosomal protein L37 hs
HG-U133A:200092_S_AT ribosomal protein L37 hs
U133_X3P:200092_S_AT ribosomal protein L37 hs
HU35KSUBB:RC_W73010_AT ribosomal protein L37 hs
HU35KSUBB:RC_R49047_AT ribosomal protein L37 hs
HU35KSUBC:RC_AA456673_AT ribosomal protein L37 hs
HU35KSUBD:RC_AA262456_AT ribosomal protein L37 hs
U133_X3P:HS.80545.1.A3_3P_AT ribosomal protein L37 hs
U133_X3P:HS.80545.1.A2_3P_AT ribosomal protein L37 hs
U133_X3P:HS.80545.1.A1_3P_AT ribosomal protein L37 hs
U133_X3P:HS.179779.1.S1_3P_A_AT ribosomal protein L37 hs
HG-U133_PLUS_2:224763_AT ribosomal protein L37 hs
HG-U133B:224763_AT ribosomal protein L37 hs
HG-U133_PLUS_2:224766_AT ribosomal protein L37 hs
HG-U133B:224766_AT ribosomal protein L37 hs
HG-U133_PLUS_2:224767_AT ribosomal protein L37 hs
HG-U133B:224767_AT ribosomal protein L37 hs
HG-U95B:52614_AT ribosomal protein L37 hs
HG-U95E:68359_AT ribosomal protein L37 hs
HG-U95D:82154_AT ribosomal protein L37 hs
U133_X3P:HS2.436389.1.A1_3P_A_AT Ribosomal protein L37 hs
HG-U133_PLUS_2:1565947_A_AT Ribosomal protein L37 hs
HG-U133_PLUS_2:1566337_X_AT Ribosomal protein L37 hs
HG-U95E:79127_AT Ribosomal protein L37 hs
HU35KSUBD:RC_AA418293_AT Ribosomal protein L37 hs
MG-U74AV2:92577_F_AT ribosomal protein L37 mm
MU11KSUBA:AA015377_F_AT ribosomal protein L37 mm
MG-U74CV2:168190_AT ribosomal protein L37 mm
MOE430A:1453729_A_AT ribosomal protein L37 mm
MOUSE430A_2:1453729_A_AT ribosomal protein L37 mm
MOUSE430_2:1453729_A_AT ribosomal protein L37 mm
MOE430A:1450838_X_AT ribosomal protein L37 mm
MOUSE430A_2:1450838_X_AT ribosomal protein L37 mm
MOUSE430_2:1450838_X_AT ribosomal protein L37 mm
MG-U74CV2:170891_AT Ribosomal protein L37 (Rpl37), mRNA mm
MU19KSUBC:TC38701_AT Ribosomal protein L37 (Rpl37), mRNA mm
MG-U74AV2:92577_F_AT ribosomal protein L37 mm
MU11KSUBA:AA015377_F_AT ribosomal protein L37 mm
MG-U74CV2:168190_AT ribosomal protein L37 mm
MOE430A:1453729_A_AT ribosomal protein L37 mm
MOUSE430A_2:1453729_A_AT ribosomal protein L37 mm
MOUSE430_2:1453729_A_AT ribosomal protein L37 mm
MOE430A:1450838_X_AT ribosomal protein L37 mm
MOUSE430A_2:1450838_X_AT ribosomal protein L37 mm
MOUSE430_2:1450838_X_AT ribosomal protein L37 mm
MG-U74CV2:170891_AT Ribosomal protein L37 (Rpl37), mRNA mm
MU19KSUBC:TC38701_AT Ribosomal protein L37 (Rpl37), mRNA mm
RG-U34A:X66369_AT ribosomal protein L37 rn
RAE230A:1398789_AT ribosomal protein L37 rn
RAT230_2:1398789_AT ribosomal protein L37 rn
RAE230B:1381399_AT ribosomal protein L37 rn
RAT230_2:1381399_AT ribosomal protein L37 rn
RG-U34A:X66369_AT ribosomal protein L37 rn
RAE230A:1398789_AT ribosomal protein L37 rn
RAT230_2:1398789_AT ribosomal protein L37 rn
RAE230B:1381399_AT ribosomal protein L37 rn
RAT230_2:1381399_AT ribosomal protein L37 rn
YEAST_2:1770284_AT Protein component of the large (60S) ribosomal subunit, has similarity to Rpl37Bp and to rat L37 ribosomal protein Sc
YEAST_2:1770284_AT Protein component of the large (60S) ribosomal subunit, has similarity to Rpl37Bp and to rat L37 ribosomal protein Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05635 Hypothetical protein W01D2.1 [Caenorhabditis elegans] ref|NP_497072.1| W01D2.1 [Caenorhabditis elegans] 3.0E-43
blast CAE60602 Hypothetical protein CBG04239 [Caenorhabditis briggsae] 2.0E-42
blast CAB00854 Hypothetical protein C54C6.1 [Caenorhabditis elegans] ref|NP_497727.1| Ribosomal Protein, Large subunit family member (rpl-37) [Caenorhabditis elegans] sp|P49622|RL37_CAEEL 60S ribosomal protein L37 2.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR001569 EMBL-EBI Ribosomal protein L37e 1.5E-34
Pfam IPR001569 EMBL-EBI Ribosomal protein L37e 1.8E-35
Sequence
Target Sequence 
>C. ELEGANS:193079_S_AT
agaagcacgttaagtctcacacgctttgcaagcgttgcggaaagtcatcgttccatatcc
agaagaagcgttgcgcttcctgcggatatcaagatgccaagaagagaacctacaactggg
gagccaagtccatccgcagacgcaccaccggaaccggccgcacccgtcatctgagagacg
tcaacgctcgcttcagaaacggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCACGTTAAGTCTCACACGCT 133 75 41 Antisense
GTTAAGTCTCACACGCTTTGCAAGC 549 445 49 Antisense
GTCTCACACGCTTTGCAAGCGTTGC 536 469 54 Antisense
GCAAGCGTTGCGGAAAGTCATCGTT 188 321 68 Antisense
GAAGAAGCGTTGCGCTTCCTGCGGA 69 341 102 Antisense
ATGCCAAGAAGAGAACCTACAACTG 638 35 134 Antisense
GAGAACCTACAACTGGGGAGCCAAG 238 391 144 Antisense
TACAACTGGGGAGCCAAGTCCATCC 617 637 151 Antisense
CCGCACCCGTCATCTGAGAGACGTC 110 263 198 Antisense
ATCTGAGAGACGTCAACGCTCGCTT 151 33 209 Antisense
GTCAACGCTCGCTTCAGAAACGGAT 331 463 220 Antisense
Sequence Source Affymetrix Proprietary Database