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[193078_s_at] Yeast hypothetical protein YPL247C like

Description F53C11.8 /REP_DB=WormBase Gene ID /WP=CE10918 /TR=Q93758 /GB=CAB02115.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YPL247C like
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 16      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 71      6grp_total > 25      4grp_total > 13      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 350.1
(0.3)
P 		331.7
(-0.5)
P 		274.7
(-3)
P 		413.9
(3)
P 		139
B 366.9
(2.2)
P 		252.5
(-2.1)
P 		230
(-3)
P 		386.6
(3)
P 		157
C 329
(-0.2)
P 		266.9
(-3)
P 		308.7
(-1.1)
P 		400.4
(3)
P 		134
avr 348.7
(0.6) 		283.7
(-2.4) 		271.1
(-3) 		400.3
(3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 463.6
(3)
P 		342.9
(-0.6)
P 		292.4
(-2.1)
P 		378.8
(0.5)
P 		263
(-3)
P 		312.9
(-1.5)
P 		201
B 310.1
(-0.1)
P 		328.3
(0.9)
P 		306
(-0.3)
P 		253.7
(-3)
P 		368.7
(3)
P 		307.7
(-0.2)
P 		115
C 402
(1.2)
P 		453
(3)
P 		404.1
(1.3)
P 		315.3
(-1.8)
P 		279.8
(-3)
P 		309.7
(-2)
P 		173
avr 391.9
(3) 		374.7
(1.8) 		334.2
(-0.9) 		315.9
(-2.2) 		303.8
(-3) 		310.1
(-2.6) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 127.5
(3)
P 		72
(-2)
P 		71.8
(-2)
P 		60.6
(-3)
P 		67
B 117
(3)
P 		62.4
(-2.1)
P 		53.3
(-3)
P 		82.4
(-0.3)
P 		64
C 108.9
(3)
P 		76.7
(-1.7)
P 		107.6
(2.8)
P 		67.5
(-3)
P 		41
avr 117.8
(3) 		70.4
(-3) 		77.6
(-2.1) 		70.2
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 85.5
(-0.8)
P 		122
(3)
P 		63.7
(-3)
P 		96.1
(0.3)
P 		79.4
(-1.4)
P 		76.2
(-1.7)
P 		58
B 107.9
(-0)
P 		109.3
(0.1)
P 		74.3
(-2.5)
P 		67.2
(-3)
P 		149.8
(3)
P 		114.7
(0.5)
P 		83
C 149
(3)
P 		138.2
(2.2)
P 		102.8
(-0.2)
P 		63.4
(-3)
P 		90.5
(-1.1)
P 		103.7
(-0.2)
P 		86
avr 114.1
(1.9) 		123.2
(3) 		80.3
(-2.4) 		75.6
(-3) 		106.6
(0.9) 		98.2
(-0.2) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193078_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13096
Sequence Type Exemplar sequence
Representative Public ID F53C11.8 NCBI
Target Description F53C11.8 /REP_DB=WormBase Gene ID /WP=CE10918 /TR=Q93758 /GB=CAB02115.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YPL247C like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074017 NCBI Caenorhabditis elegans F53C11.8 (F53C11.8) mRNA, complete cds. 11/11 None
SNAP00000007163 ENSEMBL cdna:SNAP chromosome:CEL140:V:13806724:13809800:-1 10/11 None
GENEFINDER00000007168 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13804170:13809800:-1 10/11 None
F53C11.8.2 ENSEMBL cdna:known chromosome:CEL140:V:13806984:13809828:-1 gene:F53C11.8 11/11 None
F53C11.8.1 ENSEMBL cdna:known chromosome:CEL140:V:13806984:13809826:-1 gene:F53C11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13807346-13809800(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical protein YPL247C like
Gene Symbol swan-1
Ensembl F53C11.8
Entrez Gene 179876 Entrez gene
SwissProt Q93758 EMBL-EBI
WormBase CE10918 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02115 Hypothetical protein F53C11.8 [Caenorhabditis elegans] ref|NP_506418.1| F53C11.8 [Caenorhabditis elegans] 0.0
blast CAB02116 Hypothetical protein F53C11.7 [Caenorhabditis elegans] ref|NP_506417.1| Temporarily Assigned Gene name family member (tag-206) [Caenorhabditis elegans] 0.0
blast CAE66236 Hypothetical protein CBG11480 [Caenorhabditis briggsae] 0.0
blast CAE66235 Hypothetical protein CBG11479 [Caenorhabditis briggsae] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.8E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.68
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.5E-9
Sequence
Target Sequence 
>C. ELEGANS:193078_S_AT
ggttggttgcgcaattgggcagaccaagccgacagctccattcacactcaaaacacaact
gattgctcatgacaagcctgttcacgatatcgaatttgctaaaatcaatggcggtcgtga
tcattttgcaactgttggagctgacggaagtgcccgaatgtttgatcttcgacatttaaa
ccactcgacaattgtctatgaagatccaaacaaggagaagcttcaaagactgtcatggaa
caaacaagaaccttatttcatggctttatttgccgagaacagtcaagaagttcaaattct
tgacattcgtatgccatgcaacattctctgtcgactccgtaatcacactggaccagtgaa
cggaattgcatgggccccacacagtccacatcacatttgtactgctggagacgattcaca
agctctgatttgggatctgcagcaggttccaagacccgttgatgatccgattctggctta
ttcggctggtggagaggtcaatcaaattcattggggtcctgtacacagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGGTTGCGCAATTGGGCAGACC 24 507 600 Antisense
TGCTCATGACAAGCCTGTTCACGAT 346 579 663 Antisense
TGGCGGTCGTGATCATTTTGCAACT 482 545 708 Antisense
CGTATGCCATGCAACATTCTCTGTC 492 247 907 Antisense
TCGACTCCGTAATCACACTGGACCA 105 603 930 Antisense
GTGAACGGAATTGCATGGGCCCCAC 116 481 955 Antisense
CACACAGTCCACATCACATTTGTAC 24 195 977 Antisense
GGATCTGCAGCAGGTTCCAAGACCC 66 513 1032 Antisense
AGACCCGTTGATGATCCGATTCTGG 618 69 1051 Antisense
CGATTCTGGCTTATTCGGCTGGTGG 172 249 1067 Antisense
AATTCATTGGGGTCCTGTACACAGT 507 175 1104 Antisense
Sequence Source Affymetrix Proprietary Database