[Home] | [Total List]

[193075_at] Yeast hypothetical protein L8167.12 like

Description B0334.4 /REP_DB=WormBase Gene ID /WP=CE02936 /TR=Q17476 /GB=CAA91373.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein L8167.12 like
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 85      4grp_highest_8_8 > 47      4grp_high_8_8 > 03      6grp_highest_nonorm > 96      6grp_total > 75      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 515
1 2 3 4 range
A 592.4
(-0.2)
P 		393.6
(-2.5)
P 		353.5
(-3)
P 		868.4
(3)
P 		515
B 669.8
(1.2)
P 		405.7
(-2.7)
P 		381.7
(-3)
P 		793.7
(3)
P 		412
C 589.3
(0.2)
P 		406.6
(-2.7)
P 		390.1
(-3)
P 		762.9
(3)
P 		373
avr 617.2
(0.4) 		402
(-2.6) 		375.1
(-3) 		808.3
(3) 		433

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 740
1 2 3 4 5 6 range
A 489.8
(-3)
P 		580.4
(-2.1)
P 		901.3
(1.2)
P 		804.8
(0.2)
P 		743.2
(-0.4)
P 		1078.6
(3)
P 		589
B 558.7
(-3)
P 		615.8
(-2.4)
P 		993.7
(1.9)
P 		781.7
(-0.5)
P 		802.7
(-0.2)
P 		1089.8
(3)
P 		531
C 568.3
(-3)
P 		632.7
(-2.4)
P 		601.3
(-2.7)
P 		971.9
(0.7)
P 		764.3
(-1.2)
P 		1230.2
(3)
P 		662
avr 538.9
(-3) 		609.6
(-2.3) 		832.1
(-0) 		852.8
(0.2) 		770.1
(-0.7) 		1132.9
(3) 		594
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 215.7
(3)
P 		85.4
(-3)
P 		92.4
(-2.7)
P 		127.1
(-1.1)
P 		130
B 213.6
(3)
P 		100.2
(-2.4)
P 		88.5
(-3)
P 		169.1
(0.9)
P 		125
C 195.1
(3)
P 		116.9
(-3)
P 		136
(-1.5)
P 		128.6
(-2.1)
P 		78
avr 208.1
(3) 		100.8
(-3) 		105.6
(-2.7) 		141.6
(-0.7) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 90.3
(-3)
P 		206.4
(1)
P 		196.3
(0.7)
P 		204.1
(1)
P 		224.3
(1.7)
P 		262.6
(3)
P 		172
B 194.4
(-3)
P 		205
(-2.7)
P 		241.3
(-1.7)
P 		207
(-2.6)
P 		326.1
(0.7)
P 		406.4
(3)
P 		212
C 210.6
(-1.7)
P 		193.1
(-2.1)
P 		153
(-3)
P 		195.4
(-2)
P 		247.3
(-0.8)
P 		411.8
(3)
P 		259
avr 165.1
(-3) 		201.5
(-1.9) 		196.9
(-2) 		202.2
(-1.9) 		265.9
(0.1) 		360.3
(3) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193075_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3089
Sequence Type Exemplar sequence
Representative Public ID B0334.4 NCBI
Target Description B0334.4 /REP_DB=WormBase Gene ID /WP=CE02936 /TR=Q17476 /GB=CAA91373.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein L8167.12 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064056(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064056 NCBI Caenorhabditis elegans B0334.4 (B0334.4) mRNA, complete cds. 11/11 None
SNAP00000019015 ENSEMBL cdna:SNAP chromosome:CEL140:II:11495608:11496386:1 9/11 None
GENEFINDER00000019024 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11495608:11496386:1 11/11 None
B0334.4 ENSEMBL cdna:known chromosome:CEL140:II:11495597:11496573:1 gene:B0334.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11495604-11496383(+) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical protein L8167.12 like
Ensembl B0334.4
Entrez Gene 174760 Entrez gene
SwissProt Q17476 EMBL-EBI
WormBase CE02936 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583840_AT similar to Px19-like protein (25 kDa protein of relevant evolutionary and lymphoid interest) (PRELI) cfa
CANINE_2:CFA.12159.1.A1_AT similar to Px19-like protein (25 kDa protein of relevant evolutionary and lymphoid interest) (PRELI) cfa
CANINE_2:CFAAFFX.25175.1.S1_AT similar to Px19-like protein (25 kDa protein of relevant evolutionary and lymphoid interest) (PRELI) cfa
CANINE_2:CFAAFFX.25175.1.S1_S_AT similar to Px19-like protein (25 kDa protein of relevant evolutionary and lymphoid interest) (PRELI) cfa
DROSOPHILA_2:1638735_AT dm
DROSGENOME1:154771_AT dm
CHICKEN:GGA.3883.1.S1_AT similar to px19 gga
CHICKEN:GGA.3883.1.S1_X_AT similar to px19 gga
HG-U133B:223032_X_AT px19-like protein hs
HG-U133_PLUS_2:223032_X_AT px19-like protein hs
HU35KSUBA:RC_AA262969_F_AT px19-like protein hs
HU35KSUBD:RC_H73484_S_AT px19-like protein hs
HU35KSUBD:RC_AA621349_AT px19-like protein hs
HG-U133B:224232_S_AT px19-like protein hs
HG-U133_PLUS_2:224232_S_AT px19-like protein hs
U133_X3P:G6563193_3P_A_AT px19-like protein hs
U133_X3P:G5231138_3P_S_AT px19-like protein hs
HG-U95B:46710_AT px19-like protein hs
MOUSE430_2:1431420_S_AT RIKEN cDNA 2610524G07 gene mm
MOE430A:1431420_S_AT RIKEN cDNA 2610524G07 gene mm
MOUSE430A_2:1431420_S_AT RIKEN cDNA 2610524G07 gene mm
MU11KSUBA:AA108760_S_AT RIKEN cDNA 2610524G07 gene mm
MG-U74AV2:93774_AT RIKEN cDNA 2610524G07 gene mm
MOE430A:1431421_X_AT RIKEN cDNA 2610524G07 gene mm
MOUSE430A_2:1431421_X_AT RIKEN cDNA 2610524G07 gene mm
MOUSE430_2:1431421_X_AT RIKEN cDNA 2610524G07 gene mm
MOE430A:1431419_AT RIKEN cDNA 2610524G07 gene mm
MOUSE430A_2:1431419_AT RIKEN cDNA 2610524G07 gene mm
MOUSE430_2:1431419_AT RIKEN cDNA 2610524G07 gene mm
MOE430A:1439253_X_AT RIKEN cDNA 2610524G07 gene mm
MOUSE430A_2:1439253_X_AT RIKEN cDNA 2610524G07 gene mm
MOUSE430_2:1439253_X_AT RIKEN cDNA 2610524G07 gene mm
MOE430A:1448202_X_AT RIKEN cDNA 2610524G07 gene mm
MOUSE430A_2:1448202_X_AT RIKEN cDNA 2610524G07 gene mm
MOUSE430_2:1448202_X_AT RIKEN cDNA 2610524G07 gene mm
MU19KSUBA:TC22438_AT RIKEN cDNA 2610524G07 gene, mRNA (cDNA clone MGC:35734 IMAGE:5356044) mm
RG-U34B:RC_AA944828_AT similar to px19-like protein (predicted) rn
RAE230A:1371620_AT similar to px19-like protein (predicted) rn
RAT230_2:1371620_AT similar to px19-like protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA91373 Hypothetical protein B0334.4 [Caenorhabditis elegans] ref|NP_496457.1| B0334.4 [Caenorhabditis elegans] 1.0E-107
blast CAA91373 Hypothetical protein B0334.4 [Caenorhabditis elegans] ref|NP_496457.1| B0334.4 [Caenorhabditis elegans] 2.0E-84
blast NP_001016173 hypothetical protein LOC548927 [Xenopus tropicalis] 4.0E-22
blast AAH44981 Px19-prov protein [Xenopus laevis] 2.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR006797 EMBL-EBI MSF1 3.4E-32
Pfam IPR006797 EMBL-EBI MSF1 1.2E-14
Pfam IPR006797 EMBL-EBI MSF1 2.1E-69
Sequence
Target Sequence 
>C. ELEGANS:193075_AT
gctttgggattctccgaatacctcgttcccttattcatttgatgaggttgccagtgcgtt
ttgggacagatacccaaattctcatgcaaaacacatcatttcggaggatgtactcgaacg
ccagatcactgacaacactattgtcactaaaaaattgattgtcaagcaaggaagctcgat
tttgaaacgtgttcctcgttggatttcgagaatgacagatattcaagttgttcctgtcat
tgaagaaagtgtttatgataaagtatcgaaaaaactcgtaacatacactcgaaatgtttc
acacatttctctatttcaactccatgaacgatgcatttacaaatcatccgaggataatca
gcagcatcacccagcccttctcactgacgtactgcgaagtgtcacagtttcaatcgattg
tggtcgaatgagctcagtttacgagaaagtcctactaatgggcttcaaaaaatcgatcaa
taacacaacgaaagggttgtttgagaagctagaagagcgatttggagtcaaaaacgttgc
taatgagaaaatgaaaatgatcaaggaaaagattatcaagtcatcgtcaaatctcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTTGGGATTCTCCGAATACCTCG 350 295 18 Antisense
CCTCGTTCCCTTATTCATTTGATGA 555 267 38 Antisense
GATGAGGTTGCCAGTGCGTTTTGGG 386 411 58 Antisense
GGGACAGATACCCAAATTCTCATGC 144 495 80 Antisense
ATGTACTCGAACGCCAGATCACTGA 166 49 125 Antisense
GAAACGTGTTCCTCGTTGGATTTCG 142 331 201 Antisense
TCACACATTTCTCTATTTCAACTCC 281 629 316 Antisense
GAGGATAATCAGCAGCATCACCCAG 561 403 367 Antisense
CCCTTCTCACTGACGTACTGCGAAG 468 259 392 Antisense
GAAAGTCCTACTAATGGGCTTCAAA 699 359 462 Antisense
TATCAAGTCATCGTCAAATCTCGTC 58 659 591 Antisense
Sequence Source Affymetrix Proprietary Database