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[193073_at]

Description M6.1 /REP_DB=WormBase Gene ID /WP=CE07382 /GEN=ifc-2 /TR=Q21580 /GB=AAA98708.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=intermediate filament proteim A
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 03      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 21      6grp_total > 17      4grp_total > 54      6grp_highest_sub > Cu      6grp_cgc > 24      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2065
1 2 3 4 range
A 2647
(3)
P 		1903.4
(0.2)
P 		1989.7
(0.5)
P 		1048.4
(-3)
P 		1599
B 3113.7
(3)
P 		1514.9
(-2.2)
P 		1961.8
(-0.7)
P 		1265.3
(-3)
P 		1848
C 2500.1
(3)
P 		1930.9
(0.4)
P 		1624.4
(-1)
P 		1195.8
(-3)
P 		1304
avr 2753.6
(3) 		1783.1
(-0.7) 		1858.6
(-0.4) 		1169.8
(-3) 		1584

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2365
1 2 3 4 5 6 range
A 1049.9
(-1.5)
P 		2495.4
(3)
P 		782.1
(-2.4)
P 		1439.4
(-0.3)
P 		579.3
(-3)
P 		1448.1
(-0.3)
P 		1916
B 837.4
(3)
P 		778
(1.7)
P 		775.2
(1.6)
P 		627.8
(-1.7)
P 		568.8
(-3)
P 		717.9
(0.3)
P 		269
C 2933.8
(3)
P 		598
(-3)
P 		2110.2
(0.9)
P 		587.7
(-3)
P 		1342.6
(-1.1)
P 		885.7
(-2.2)
P 		2346
avr 1607
(3) 		1290.5
(0.6) 		1222.5
(0) 		885
(-2.6) 		830.2
(-3) 		1017.2
(-1.6) 		777
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 839
1 2 3 4 range
A 963.8
(3)
P 		413.2
(-1.1)
P 		520.1
(-0.3)
P 		153.5
(-3)
P 		810
B 992.9
(3)
P 		374.1
(-2.1)
P 		454.6
(-1.5)
P 		269.6
(-3)
P 		723
C 827.6
(3)
P 		555.1
(0.4)
P 		566.2
(0.5)
P 		201.6
(-3)
P 		626
avr 928.1
(3) 		447.5
(-1) 		513.6
(-0.5) 		208.2
(-3) 		720

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 969
1 2 3 4 5 6 range
A 193.5
(-2.8)
P 		887.5
(3)
P 		170.3
(-3)
P 		365.1
(-1.4)
P 		174.8
(-3)
P 		352.6
(-1.5)
P 		717
B 291.4
(3)
P 		259
(1.4)
P 		188.2
(-1.9)
P 		166.3
(-3)
P 		231.1
(0.1)
P 		267.7
(1.9)
P 		125
C 1087.4
(3)
P 		182.5
(-2.6)
P 		537.1
(-0.4)
P 		118.2
(-3)
P 		434.4
(-1)
P 		296.5
(-1.9)
P 		969
avr 524.1
(3) 		443
(1.4) 		298.5
(-1.4) 		216.5
(-3) 		280.1
(-1.8) 		305.6
(-1.3) 		308
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193073_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18205
Sequence Type Exemplar sequence
Representative Public ID M6.1 NCBI
Target Description M6.1 /REP_DB=WormBase Gene ID /WP=CE07382 /GEN=ifc-2 /TR=Q21580 /GB=AAA98708.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=intermediate filament proteim A
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171613(11), NM_171614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171613 NCBI Caenorhabditis elegans Intermediate Filament, C family member (ifc-2) (ifc-2) mRNA, complete cds. 11/11 None
NM_171614 NCBI Caenorhabditis elegans Intermediate Filament, C family member (ifc-2) (ifc-2) mRNA, complete cds. 11/11 None
SNAP00000028056 ENSEMBL cdna:SNAP chromosome:CEL140:X:642213:645671:-1 11/11 None
M6.1b ENSEMBL cdna:known chromosome:CEL140:X:642175:650091:-1 gene:M6.1 11/11 None
M6.1a ENSEMBL cdna:known chromosome:CEL140:X:643145:650091:-1 gene:M6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180414 3 2 NM_171613 193073_at (11)
NM_171614 174548_at (11), 193073_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:643680-650091(-) 100.0 100.0
Public Domain and Genome References
Ensembl M6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69101 Intermediate filament, c protein 2, isoform b [Caenorhabditis elegans] ref|NP_741705.1| Intermediate Filament, C family member (ifc-2) [Caenorhabditis elegans] 0.0
blast AAM69100 Intermediate filament, c protein 2, isoform a [Caenorhabditis elegans] ref|NP_741706.1| Intermediate Filament, C family member (ifc-2) [Caenorhabditis elegans] 0.0
blast T29185 hypothetical protein M6.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001664 EMBL-EBI Intermediate filament protein 1.0E-12
Pfam IPR001664 EMBL-EBI Intermediate filament protein 8.1E-12
Pfam IPR001664 EMBL-EBI Intermediate filament protein 1.0E-12
Pfam IPR001664 EMBL-EBI Intermediate filament protein 8.1E-12
Sequence
Target Sequence 
>C. ELEGANS:193073_AT
caaggaagaactcatctccatccgcacgaccgtgacaaatgtccgaagcagacttgccga
ggttgaaggaagaaacttcttccttgagcggctcattgatgacctaaagaacaacgagga
agccaagttcttcgagatcagccttgccgagagagacgcccagattgcgaccctccgtga
ccagtgcacagagctcagcattcaaatggagaaactctgtgacaacgaaatttccctccg
cgccgaaatcgagcgctatcgcatcctcctcaacggagcaaacgtgacaacgtacacctc
caatacgcacggaagcggctctggaatcgcagtcggtggtgttgttggaggatcaacccg
cgttatatctcaaaccacgagaacccacagcagcagcaatacgagctactcaaatgtccc
tgcctctagaggcggctactccatcagtgggaacgttggaggaatttcagttggaggaac
cattggatcgcacggagcttcggcccatgcgacaggaggaatcattggctctggagttca
ggcgcacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGGAAGAACTCATCTCCATCCGC 352 183 2835 Antisense
TTCTTCGAGATCAGCCTTGCCGAGA 1 691 2962 Antisense
GACCAGTGCACAGAGCTCAGCATTC 54 383 3013 Antisense
CTGTGACAACGAAATTTCCCTCCGC 709 239 3051 Antisense
CGAAATCGAGCGCTATCGCATCCTC 102 253 3078 Antisense
TCGCATCCTCCTCAACGGAGCAAAC 677 599 3093 Antisense
AACGTGACAACGTACACCTCCAATA 469 143 3115 Antisense
AAGCGGCTCTGGAATCGCAGTCGGT 560 149 3147 Antisense
GGATCAACCCGCGTTATATCTCAAA 9 511 3184 Antisense
AATGTCCCTGCCTCTAGAGGCGGCT 68 163 3247 Antisense
TTGGCTCTGGAGTTCAGGCGCACAG 291 707 3359 Antisense
Sequence Source Affymetrix Proprietary Database