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[193071_at] signal recognition particle protein

Description F08D12.1 /REP_DB=WormBase Gene ID /WP=CE09234 /TR=SW:P91240 /GB=AAB37925.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=signal recognition particle protein
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 82      6grp_total > 65      4grp_total > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 639
1 2 3 4 range
A 1043.1
(1.7)
P 		917.2
(0.2)
P 		1159.3
(3)
P 		631.7
(-3)
P 		528
B 1028.2
(3)
P 		879.8
(1.2)
P 		936.2
(1.9)
P 		520.7
(-3)
P 		508
C 840.2
(-0.4)
P 		988.5
(1.3)
P 		1139.2
(3)
P 		610.6
(-3)
P 		529
avr 970.5
(1.7) 		928.5
(1.2) 		1078.2
(3) 		587.7
(-3) 		491

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 499
1 2 3 4 5 6 range
A 273.7
(-2.7)
P 		285
(-2.5)
P 		431.8
(-0.1)
P 		306.8
(-2.2)
P 		254.5
(-3)
P 		626.5
(3)
P 		372
B 390.7
(0.6)
P 		263
(-1.1)
P 		441.7
(1.3)
P 		285.1
(-0.8)
P 		127.2
(-3)
P 		566
(3)
P 		439
C 192.3
(-3)
P 		235.1
(-2.3)
P 		581.5
(2.8)
P 		289.3
(-1.5)
P 		190.2
(-3)
P 		593.8
(3)
P 		404
avr 285.6
(-1.6) 		261
(-2) 		485
(1.4) 		293.7
(-1.5) 		190.6
(-3) 		595.4
(3) 		405
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 379.8
(3)
P 		199.1
(-0.8)
P 		303.1
(1.4)
P 		92.5
(-3)
P 		287
B 327.9
(3)
P 		217.3
(-0.1)
P 		216.9
(-0.1)
P 		111
(-3)
P 		217
C 278.1
(0.6)
P 		284.2
(0.7)
P 		397
(3)
P 		103
(-3)
P 		294
avr 328.6
(3) 		233.5
(0.5) 		305.7
(2.4) 		102.2
(-3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 50.5
(-3)
P 		101.4
(-0)
P 		94
(-0.4)
P 		77.8
(-1.4)
P 		76.8
(-1.5)
P 		152.5
(3)
P 		102
B 136
(0.2)
P 		87.5
(-1.7)
P 		107.3
(-0.9)
P 		75.5
(-2.1)
P 		51.7
(-3)
P 		211
(3)
P 		159
C 71.3
(-2.4)
P 		71.7
(-2.4)
P 		148
(0.8)
P 		58.2
(-3)
P 		61.5
(-2.9)
P 		198.8
(3)
P 		141
avr 85.9
(-1.9) 		86.9
(-1.9) 		116.4
(-0.4) 		70.5
(-2.7) 		63.3
(-3) 		187.4
(3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193071_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4606
Sequence Type Exemplar sequence
Representative Public ID F08D12.1 NCBI
Target Description F08D12.1 /REP_DB=WormBase Gene ID /WP=CE09234 /TR=SW:P91240 /GB=AAB37925.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=signal recognition particle protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061965(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061965 NCBI Caenorhabditis elegans F08D12.1 (F08D12.1) mRNA, complete cds. 11/11 None
SNAP00000023722 ENSEMBL cdna:SNAP chromosome:CEL140:II:2787482:2796179:1 11/11 None
GENEFINDER00000023727 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2787482:2793733:1 11/11 None
F08D12.1 ENSEMBL cdna:known chromosome:CEL140:II:2787481:2793939:1 gene:F08D12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2787480-2793201(+) 99.57 100.0
Public Domain and Genome References
Gene Title signal recognition particle protein
Ensembl F08D12.1
Entrez Gene 173625 Entrez gene
SwissProt P91240 EMBL-EBI
WormBase CE09234 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245187_S_AT expressed protein at
CANINE:1598160_AT signal recognition particle 72kDa cfa
CANINE_2:CFA.3804.1.S1_S_AT signal recognition particle 72kDa cfa
DROSOPHILA_2:1631531_AT dm
DROSGENOME1:141425_AT dm
CHICKEN:GGA.8487.1.S1_AT signal recognition particle 72kDa gga
CHICKEN:GGA.8487.2.S1_AT signal recognition particle 72kDa gga
CHICKEN:GGA.8487.2.S1_S_AT signal recognition particle 72kDa gga
HG-U133A:208803_S_AT signal recognition particle 72kDa hs
HG-U133_PLUS_2:208803_S_AT signal recognition particle 72kDa hs
HG-U133A_2:208803_S_AT signal recognition particle 72kDa hs
HG-U133A:208800_AT signal recognition particle 72kDa hs
HG-U133_PLUS_2:208800_AT signal recognition particle 72kDa hs
HG-U133A_2:208800_AT signal recognition particle 72kDa hs
HG-U133_PLUS_2:208801_AT signal recognition particle 72kDa hs
HG-U133A_2:208801_AT signal recognition particle 72kDa hs
HG-FOCUS:208801_AT signal recognition particle 72kDa hs
HG-U133A:208801_AT signal recognition particle 72kDa hs
HG-U133_PLUS_2:208802_AT signal recognition particle 72kDa hs
HG-U133A:208802_AT signal recognition particle 72kDa hs
HG-U133A_2:208802_AT signal recognition particle 72kDa hs
HG-U133_PLUS_2:208095_S_AT signal recognition particle 72kDa hs
HG-U133A:208095_S_AT signal recognition particle 72kDa hs
HG-FOCUS:208095_S_AT signal recognition particle 72kDa hs
HG-U133A_2:208095_S_AT signal recognition particle 72kDa hs
HU35KSUBC:RC_W94728_AT signal recognition particle 72kDa hs
HU35KSUBC:RC_W32523_AT signal recognition particle 72kDa hs
HU35KSUBD:RC_AA417039_AT signal recognition particle 72kDa hs
HU35KSUBD:RC_W45218_AT signal recognition particle 72kDa hs
HU35KSUBD:RC_AA481069_AT signal recognition particle 72kDa hs
HU35KSUBD:RC_AA448297_AT signal recognition particle 72kDa hs
HUGENEFL:U81554_AT signal recognition particle 72kDa hs
U133_X3P:G4502554_3P_S_AT signal recognition particle 72kDa hs
U133_X3P:G3243032_3P_A_AT signal recognition particle 72kDa hs
U133_X3P:HS.237825.0.A4_3P_AT signal recognition particle 72kDa hs
U133_X3P:HS.237825.0.A3_3P_AT signal recognition particle 72kDa hs
U133_X3P:HS.237825.0.A2_3P_AT signal recognition particle 72kDa hs
HG-U95AV2:31670_S_AT signal recognition particle 72kDa hs
HG-U95AV2:33837_AT signal recognition particle 72kDa hs
HG-U133_PLUS_2:235833_AT Signal recognition particle 72kDa hs
HG-U133B:235833_AT Signal recognition particle 72kDa hs
HG-U95C:53375_AT Signal recognition particle 72kDa hs
HG-U95E:86646_AT Signal recognition particle 72kDa hs
U133_X3P:HS.202558.0.A1_3P_AT Signal recognition particle 72kDa hs
MG-U74BV2:106575_AT signal recognition particle 72 mm
MG-U74BV2:107619_S_AT signal recognition particle 72 mm
MG-U74BV2:106574_AT signal recognition particle 72 mm
MOE430B:1428876_AT signal recognition particle 72 mm
MOUSE430_2:1428876_AT signal recognition particle 72 mm
MOE430B:1428877_AT signal recognition particle 72 mm
MOUSE430_2:1428877_AT signal recognition particle 72 mm
RAE230A:1375552_AT similar to signal recognition particle,72 kDa subunit rn
RAT230_2:1375552_AT similar to signal recognition particle,72 kDa subunit rn
Protein Similarities
Method ID Description E-Value
blast AAB37925 Hypothetical protein F08D12.1 [Caenorhabditis elegans] ref|NP_494366.1| F08D12.1 [Caenorhabditis elegans] sp|P91240|SRP72_CAEEL Signal recognition particle 72 kDa protein homolog (SRP72) 0.0
blast CAE72426 Hypothetical protein CBG19592 [Caenorhabditis briggsae] 0.0
blast XP_797070 PREDICTED: similar to signal recognition particle 72kDa [Strongylocentrotus purpuratus] 2.0E-67
blast XP_797070 PREDICTED: similar to signal recognition particle 72kDa [Strongylocentrotus purpuratus] 4.0E-63
Sequence
Target Sequence 
>C. ELEGANS:193071_AT
agcagcaacggggcaacgagacggctgctacgaagcatttggagaagctcgtcgagaaat
tcccggaggatttgcagctgcagtgtcgattggtcggagcctactcgaagactgatccga
agaaggccgaaagccttagtgctaagctgttcccggagacgatggaagtcgatgtgaacg
ttgacgagctcgaggattcggattggatcctttacggtgagaaataccgtcaaaagaagg
aggcaaagtcaccacaaactgctgaaattgctgctactcgaaagctgaaaatcgcgacga
agcgaaaacggaagattcgtctcccgaagaactacaattccgcagtgactccggatccag
aacgatggcttccacgccaagaacgatcgacttacaagcgaaaacggaagaaccgagaac
gcgaaattggccgtggaactcaaggatcttcgtctgcgaatccgaatgtcgaatatgtga
cagcgtctccgaattcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGCAACGGGGCAACGAGACGGC 429 73 1505 Antisense
TTGCAGCTGCAGTGTCGATTGGTCG 524 701 1576 Antisense
GATTGGTCGGAGCCTACTCGAAGAC 681 433 1592 Antisense
GCTAAGCTGTTCCCGGAGACGATGG 567 299 1645 Antisense
AACTGCTGAAATTGCTGCTACTCGA 428 141 1761 Antisense
GTCTCCCGAAGAACTACAATTCCGC 227 469 1823 Antisense
CAATTCCGCAGTGACTCCGGATCCA 4 181 1839 Antisense
CGGATCCAGAACGATGGCTTCCACG 563 243 1856 Antisense
CTTCCACGCCAAGAACGATCGACTT 685 215 1873 Antisense
CAAGGATCTTCGTCTGCGAATCCGA 573 183 1945 Antisense
TATGTGACAGCGTCTCCGAATTCGC 700 655 1978 Antisense
Sequence Source Affymetrix Proprietary Database