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[193069_at] Zinc finger, C3HC4 type (RING finger)

Description F44D12.10 /REP_DB=WormBase Gene ID /WP=CE03333 /TR=Q20397 /GB=CAA92606.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_total > 45      4grp_total > 29      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 25.2
(-0)
A 		24.3
(-0.2)
A 		5.5
(-3)
A 		45.4
(3)
A 		40
B 64.2
(3)
A 		33.5
(-0.9)
A 		17.2
(-3)
A 		20.8
(-2.5)
A 		47
C 37.4
(0.6)
A 		27.8
(-0.4)
A 		3.7
(-3)
A 		59.4
(3)
A 		56
avr 42.3
(3) 		28.5
(0.5) 		8.8
(-3) 		41.9
(2.9) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 8.1
(-3)
A 		41.1
(0.9)
A 		59.3
(3)
A 		24
(-1.1)
A 		17.3
(-1.9)
A 		30.6
(-0.4)
A 		51
B 54.5
(3)
A 		35.9
(-0.2)
A 		19.4
(-3)
A 		33.2
(-0.6)
A 		22
(-2.6)
A 		41.3
(0.7)
A 		35
C 13.3
(-3)
A 		43.4
(3)
A 		32
(0.7)
A 		16.2
(-2.4)
A 		15.3
(-2.6)
A 		27.8
(-0.1)
A 		30
avr 25.3
(-1.1) 		40.1
(3) 		36.9
(2.1) 		24.5
(-1.3) 		18.2
(-3) 		33.2
(1.1) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 9.2
(3)
A 		5.3
(0)
A 		1.4
(-3)
A 		6.6
(1)
A 		8
B 20.5
(3)
A 		8.3
(-1.4)
A 		4
(-3)
A 		4.4
(-2.9)
A 		17
C 12.4
(3)
A 		8
(0.6)
A 		1.3
(-3)
A 		10
(1.7)
A 		11
avr 14
(3) 		7.2
(-0.5) 		2.2
(-3) 		7
(-0.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.5
(-3)
A 		14.6
(3)
A 		12.9
(2.2)
A 		6.1
(-0.9)
A 		5.2
(-1.3)
A 		7.4
(-0.3)
A 		13
B 18.9
(3)
A 		11.9
(0)
A 		4.7
(-3)
A 		8.8
(-1.3)
A 		9
(-1.2)
A 		15.4
(1.5)
A 		14
C 4.9
(-2)
A 		13.2
(3)
A 		8.1
(-0.1)
A 		3.3
(-3)
A 		4.9
(-2)
A 		9.3
(0.6)
A 		10
avr 8.4
(-1.1) 		13.2
(3) 		8.6
(-0.9) 		6.1
(-3) 		6.4
(-2.7) 		10.7
(0.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193069_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8648
Sequence Type Exemplar sequence
Representative Public ID F44D12.10 NCBI
Target Description F44D12.10 /REP_DB=WormBase Gene ID /WP=CE03333 /TR=Q20397 /GB=CAA92606.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069413(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069413 NCBI Caenorhabditis elegans F44D12.10 (F44D12.10) mRNA, complete cds. 11/11 None
F44D12.10 ENSEMBL cdna:known chromosome:CEL140:IV:10036721:10037038:-1 gene:F44D12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10036673-10037044(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl F44D12.10
Entrez Gene 185732 Entrez gene
SwissProt Q20397 EMBL-EBI
WormBase CE36486 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92606 Hypothetical protein F44D12.10 [Caenorhabditis elegans] ref|NP_501814.2| F44D12.10 [Caenorhabditis elegans] 5.0E-50
blast CAE67264 Hypothetical protein CBG12711 [Caenorhabditis briggsae] 2.0E-16
blast CAB60579 Hypothetical protein Y6D1A.2 [Caenorhabditis elegans] ref|NP_496525.1| Y6D1A.2 [Caenorhabditis elegans] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:193069_AT
gaaagaagctctcaacacagaacgagagaaaactgattcatatcgattgaaatggcttga
ccaaatgagaaagatggtgttcaatatggaggaagaaaatggagaaccttttgattgcag
aatttgtgagatctgtgctgctccatacagagaagatgcgatgcgagcgccacgtgttct
tccctgtgaccacacaatctgcactgattgcgctggtcatttcgtccaaaagaaacaatt
ctctgtccattcgatcgccaaatttcacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGAAGCTCTCAACACAGAACGA 564 359 15 Antisense
ATATCGATTGAAATGGCTTGACCAA 293 19 54 Antisense
TGGAGAACCTTTTGATTGCAGAATT 105 549 114 Antisense
TTGTGAGATCTGTGCTGCTCCATAC 382 709 138 Antisense
GTGCTGCTCCATACAGAGAAGATGC 27 479 149 Antisense
AGAAGATGCGATGCGAGCGCCACGT 272 75 165 Antisense
CTGTGACCACACAATCTGCACTGAT 464 239 198 Antisense
ATCTGCACTGATTGCGCTGGTCATT 169 33 211 Antisense
TTGCGCTGGTCATTTCGTCCAAAAG 20 703 222 Antisense
AGAAACAATTCTCTGTCCATTCGAT 436 73 245 Antisense
TCCATTCGATCGCCAAATTTCACAG 658 589 260 Antisense
Sequence Source Affymetrix Proprietary Database