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[193067_at]

Description ZK849.2 /REP_DB=WormBase Gene ID /WP=CE16748 /TR=O18302 /GB=CAB05026.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF).
Cluster 6grp_total > 15      4grp_total > 13      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 73.7
(1)
A 		3.5
(-3)
A 		16.5
(-2.3)
A 		110.1
(3)
A 		107
B 55
(-0.5)
A 		45.3
(-1.1)
A 		15.1
(-3)
A 		111.2
(3)
A 		96
C 93.5
(2.8)
A 		58.8
(-0.2)
A 		25
(-3)
A 		96.3
(3)
A 		71
avr 74.1
(0.8) 		35.9
(-1.8) 		18.9
(-3) 		105.9
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 2.6
(-3)
A 		57.2
(3)
A 		46.6
(1.8)
A 		3.1
(-2.9)
A 		28.1
(-0.2)
A 		3.8
(-2.9)
A 		55
B 58.3
(3)
A 		22.7
(-0.8)
A 		2.2
(-3)
A 		1.8
(-3)
A 		19.4
(-1.1)
A 		19.1
(-1.2)
A 		57
C 66.9
(3)
A 		47
(1.2)
A 		8.1
(-2.4)
A 		34
(-0)
A 		11.2
(-2.1)
A 		1.4
(-3)
A 		66
avr 42.6
(3) 		42.3
(2.9) 		19
(-1.1) 		13
(-2.1) 		19.6
(-1) 		8.1
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 26.8
(3)
A 		0.8
(-3)
A 		4.3
(-2.2)
A 		16.1
(0.5)
A 		26
B 17.5
(1.2)
A 		11.2
(-0.7)
A 		3.5
(-3)
A 		23.7
(3)
A 		20
C 31
(3)
A 		16.9
(-0.8)
A 		8.7
(-3)
A 		16.2
(-1)
A 		22
avr 25.1
(3) 		9.6
(-1.7) 		5.5
(-3) 		18.7
(1) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 0.5
(-3)
A 		20.3
(3)
A 		10.2
(-0.1)
A 		0.8
(-2.9)
A 		8.5
(-0.6)
A 		0.9
(-2.9)
A 		20
B 20.3
(3)
A 		7.5
(-0.9)
A 		0.5
(-3)
A 		0.5
(-3)
A 		7.9
(-0.8)
A 		7.1
(-1)
A 		20
C 24.8
(3)
A 		14.3
(0.4)
A 		2.1
(-2.6)
A 		6.8
(-1.4)
A 		3.6
(-2.2)
A 		0.5
(-3)
A 		24
avr 15.2
(3) 		14
(2.4) 		4.3
(-2.2) 		2.7
(-3) 		6.7
(-1.1) 		2.8
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193067_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1705
Sequence Type Exemplar sequence
Representative Public ID ZK849.2 NCBI
Target Description ZK849.2 /REP_DB=WormBase Gene ID /WP=CE16748 /TR=O18302 /GB=CAB05026.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF).
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026706(11), NM_001026707(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026706 NCBI Caenorhabditis elegans ZK849.2a (ZK849.2) mRNA, complete cds. 11/11 None
NM_001026707 NCBI Caenorhabditis elegans ZK849.2b (ZK849.2) mRNA, complete cds. 11/11 None
GENEFINDER00000021696 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14190905:14196411:-1 11/11 None
SNAP00000021688 ENSEMBL cdna:SNAP chromosome:CEL140:I:14193979:14196411:-1 11/11 None
ZK849.2 ENSEMBL cdna:known chromosome:CEL140:I:14193761:14197013:-1 gene:ZK849.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14194580-14196944(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK849.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05026 Hypothetical protein ZK849.2a [Caenorhabditis elegans] ref|NP_001021877.1| ZK849.2a [Caenorhabditis elegans] 0.0
blast CAI79281 Hypothetical protein ZK849.2b [Caenorhabditis elegans] ref|NP_001021878.1| ZK849.2b [Caenorhabditis elegans] 0.0
blast CAE71790 Hypothetical protein CBG18798 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 5.6E-16
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 5.6E-16
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 5.6E-16
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 3.7E-11
Sequence
Target Sequence 
>C. ELEGANS:193067_AT
aacggacgattcaggccttggagactgaggtcttcggggccaggctggcggcaaagtacc
tggataaggaactcgcaggccggatacaacaaatccagctcctgggacgaaacatgcgcg
gcgtggagcacgacaggctctggaaccagctggaagccgaaattcacctccacaggcaca
agacagtgatccgggcttgcagaggacggggtaacacgaagggattaacggcgccacttc
gtcacaacttcaagagcctccgaaaacgaaatggagtgggaaagagcaggaaagtggtgc
tctcgaaacacccgcacgaagggctcggcatttctattacgggaggatccgaacacgctc
tacccatagtgatatctgaaatccagccgggacagcctgctgaccgatgtggacaggtct
ttgtgggcgacgcgattctctcagtaaacggctacgatcttcggactgtcaagcatcagg
aggcagtggatattttgagtgggcaggtacagcaaggcgacctagacctggagctcgtct
ttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGACGATTCAGGCCTTGGAGAC 672 141 575 Antisense
TAAGGAACTCGCAGGCCGGATACAA 137 637 639 Antisense
CAGCTCCTGGGACGAAACATGCGCG 545 203 670 Antisense
GCCACTTCGTCACAACTTCAAGAGC 526 279 807 Antisense
AAAGTGGTGCTCTCGAAACACCCGC 439 119 865 Antisense
CGAAGGGCTCGGCATTTCTATTACG 72 243 891 Antisense
GAACACGCTCTACCCATAGTGATAT 102 353 925 Antisense
GACGCGATTCTCTCAGTAAACGGCT 545 379 1003 Antisense
GGCTACGATCTTCGGACTGTCAAGC 475 537 1024 Antisense
GGTACAGCAAGGCGACCTAGACCTG 350 501 1080 Antisense
CCTAGACCTGGAGCTCGTCTTTGTG 147 269 1095 Antisense
Sequence Source Affymetrix Proprietary Database