[Home] | [Total List]

[193066_s_at] guanylate cyclase receptor

Description C30G4.3 /REP_DB=WormBase Gene ID /WP=CE06899 /GEN=gcy-11 /TR=Q18331 /GB=AAA93421.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=guanylate cyclase receptor
Cluster 6grp_high1_10_10 > 36      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_total > 36      4grp_total > 38      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 352.3
(3)
P 		247.5
(-1.3)
P 		205
(-3)
P 		243.1
(-1.4)
P 		147
B 394.2
(3)
P 		202.1
(-2.7)
P 		191.6
(-3)
P 		215.4
(-2.3)
P 		203
C 357.1
(3)
P 		217.2
(-1.6)
P 		175.5
(-3)
P 		207.4
(-1.9)
P 		182
avr 367.9
(3) 		222.3
(-1.9) 		190.7
(-3) 		222
(-1.9) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 343.4
(3)
P 		298
(1.3)
P 		205.4
(-2.1)
P 		189.9
(-2.7)
P 		182
(-3)
A 		231.5
(-1.2)
P 		161
B 320.6
(3)
P 		313.9
(2.7)
P 		221.9
(-1.1)
P 		247.2
(-0)
P 		175
(-3)
P 		239.2
(-0.4)
P 		146
C 306.2
(3)
P 		290.6
(2.1)
P 		252.2
(-0.1)
P 		223.6
(-1.7)
P 		200.7
(-3)
P 		297.2
(2.5)
P 		106
avr 323.4
(3) 		300.8
(2) 		226.5
(-1.2) 		220.2
(-1.5) 		185.9
(-3) 		256
(0.1) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 128.3
(3)
P 		53.7
(-1.8)
P 		53.6
(-1.8)
P 		35.6
(-3)
P 		93
B 125.7
(3)
P 		49.9
(-2.6)
P 		44.4
(-3)
P 		45.9
(-2.9)
P 		81
C 118.2
(3)
P 		62.5
(-1)
P 		61.2
(-1.1)
P 		35
(-3)
P 		83
avr 124.1
(3) 		55.4
(-1.8) 		53.1
(-2) 		38.8
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 63.3
(-1.2)
P 		106
(3)
P 		44.7
(-3)
P 		48.2
(-2.7)
P 		54.9
(-2)
A 		56.4
(-1.9)
P 		61
B 111.5
(3)
P 		104.5
(2.3)
P 		53.9
(-3)
P 		65.5
(-1.8)
P 		71.1
(-1.2)
P 		89.2
(0.7)
P 		58
C 113.5
(3)
P 		88.7
(0.8)
P 		64.2
(-1.3)
P 		45
(-3)
P 		65
(-1.2)
P 		99.5
(1.8)
P 		69
avr 96.1
(2.5) 		99.7
(3) 		54.3
(-2.8) 		52.9
(-3) 		63.7
(-1.6) 		81.7
(0.7) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193066_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17668
Sequence Type Exemplar sequence
Representative Public ID C30G4.3 NCBI
Target Description C30G4.3 /REP_DB=WormBase Gene ID /WP=CE06899 /GEN=gcy-11 /TR=Q18331 /GB=AAA93421.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=guanylate cyclase receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078354(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078354 NCBI Caenorhabditis elegans Guanylyl CYclase family member (gcy-11) (gcy-11) mRNA, complete cds. 11/11 None
SNAP00000042117 ENSEMBL cdna:SNAP chromosome:CEL140:X:17046202:17051164:-1 11/11 None
GENEFINDER00000042125 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17046202:17058271:-1 11/11 None
C30G4.3 ENSEMBL cdna:known chromosome:CEL140:X:17046174:17053746:-1 gene:C30G4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17046201-17053746(-) 97.64 100.0
Public Domain and Genome References
Gene Title guanylate cyclase receptor
Gene Symbol gcy-11
Ensembl C30G4.3
Entrez Gene 181745 Entrez gene
SwissProt Q18331 EMBL-EBI
WormBase CE06899 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4383 guanylate cyclase activity inferred from electronic annotation QuickGO AmiGO
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA93421 Guanylyl cyclase protein 11 [Caenorhabditis elegans] ref|NP_510755.1| Guanylyl CYclase family member (gcy-11) [Caenorhabditis elegans] 0.0
blast CAE69710 Hypothetical protein CBG15978 [Caenorhabditis briggsae] 0.0
blast XP_623361 PREDICTED: similar to ENSANGP00000009149 [Apis mellifera] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 0.026
Pfam IPR000719 EMBL-EBI Protein kinase 5.1E-10
Pfam IPR001054 EMBL-EBI Guanylate cyclase 6.2E-75
Pfam IPR000719 EMBL-EBI Protein kinase 5.1E-10
Pfam IPR001054 EMBL-EBI Guanylate cyclase 6.2E-75
Pfam IPR000580 EMBL-EBI TSC-22 / Dip / Bun 6.4E-26
Pfam IPR000719 EMBL-EBI Protein kinase 0.026
Pfam IPR000719 EMBL-EBI Protein kinase 5.1E-10
Pfam IPR001054 EMBL-EBI Guanylate cyclase 6.2E-75
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000042117 1 217-239
GENEFINDER00000042125 2 311-333,576-598
Sequence
Target Sequence 
>C. ELEGANS:193066_S_AT
acattgtgggcttcactgcgttgagcagcaagagtacaccattgcaagttgtcaacatgc
tcaacaacctgtacactaactttgataccatcatcgacaagtttgattgttacaaggttg
aaaccatcggtgatgcttacatgtttgtatctggtcttccggaagttaacagctatcttc
atgcaggagaggttgcgtctgctagtttggaacttttggatagtataaagacattcactg
tgagtcactgccctgatgagaagctccgtttgagaattggtaaccacactgggcctgttg
tcaccggtgttgtaggaattcgtatgccacgttactgcttgttcggtgacactgtaatca
ttgcgaatatgatggaaagtagtggagagccaatgcgaatccaaatctcaagcgacgcct
acgaactgatcttgaagtgtggtggatatgtgactgagcaacgcgaaaagattgtgctaa
agaataagttggaagtgatgacctactggatgaatgactactcgaaggatgcgcgactcg
caagattggtggctcaccaggagaagttcccacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATTGTGGGCTTCACTGCGTTGAG 270 105 2570 Antisense
TACATGTTTGTATCTGGTCTTCCGG 169 645 2707 Antisense
GAGGTTGCGTCTGCTAGTTTGGAAC 376 401 2758 Antisense
ATTCACTGTGAGTCACTGCCCTGAT 672 11 2802 Antisense
GAATTGGTAACCACACTGGGCCTGT 481 321 2843 Antisense
GCCTGTTGTCACCGGTGTTGTAGGA 442 283 2862 Antisense
GAATTCGTATGCCACGTTACTGCTT 709 323 2885 Antisense
TCAAGCGACGCCTACGAACTGATCT 613 631 2977 Antisense
CTACTCGAAGGATGCGCGACTCGCA 65 225 3087 Antisense
GCGACTCGCAAGATTGGTGGCTCAC 597 289 3102 Antisense
GGCTCACCAGGAGAAGTTCCCACAT 44 539 3120 Antisense
Sequence Source Affymetrix Proprietary Database