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[193064_at] Elongation factor 1 (beta/delta chain)

Description Y41E3.10 /REP_DB=WormBase Gene ID /WP=CE18378 /TR=Q9U2H9 /GB=CAB63360.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Elongation factor 1 (beta-delta chain)
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 11      4grp_high_8_8 > 39      6grp_highest_nonorm > 36      6grp_total > 50      4grp_total > 40      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3301
1 2 3 4 range
A 7765.8
(-3)
P 		9881.2
(3)
P 		9190.8
(1)
P 		8773.2
(-0.1)
P 		2115
B 7670.9
(-3)
P 		7756.7
(-2.8)
P 		10971.5
(3)
P 		7778
(-2.8)
P 		3301
C 7971.8
(-3)
P 		9057.3
(0.4)
P 		8670.6
(-0.8)
P 		9879.3
(3)
P 		1908
avr 7802.8
(-3) 		8898.4
(0.6) 		9611
(3) 		8810.2
(0.3) 		1808

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2058
1 2 3 4 5 6 range
A 4147
(-1.1)
P 		5184.3
(1.9)
P 		3501.8
(-3)
P 		5559.4
(3)
P 		3684.5
(-2.5)
P 		3993.2
(-1.6)
P 		2058
B 4201.2
(-0.6)
P 		4235.4
(-0.5)
P 		5098.2
(3)
P 		4777.5
(1.7)
P 		4745.4
(1.6)
P 		3607.5
(-3)
P 		1491
C 4701.3
(1)
P 		4101.3
(-1.4)
P 		5177.7
(3)
P 		4367.2
(-0.3)
P 		4343.1
(-0.4)
P 		3718.5
(-3)
P 		1459
avr 4349.8
(0.1) 		4507
(0.9) 		4592.6
(1.4) 		4901.4
(3) 		4257.7
(-0.4) 		3773.1
(-3) 		1128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1738
1 2 3 4 range
A 2827.5
(3)
P 		2144.9
(0.3)
P 		2402.7
(1.3)
P 		1284.2
(-3)
P 		1543
B 2446.2
(2.3)
P 		1915.7
(-1.2)
P 		2542.3
(3)
P 		1657.5
(-3)
P 		885
C 2638.9
(1.3)
P 		2604
(1.2)
P 		3022
(3)
P 		1665.8
(-3)
P 		1356
avr 2637.5
(2.9) 		2221.5
(0.7) 		2655.7
(3) 		1535.8
(-3) 		1120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1165
1 2 3 4 5 6 range
A 764.5
(-3)
P 		1843.8
(3)
P 		762.6
(-3)
P 		1410
(0.6)
P 		1111.8
(-1.1)
P 		972.2
(-1.8)
P 		1081
B 1461.8
(-1.1)
P 		1409.8
(-1.5)
P 		1238
(-3)
P 		1265.4
(-2.8)
P 		1928
(3)
P 		1345.2
(-2.1)
P 		690
C 1742.6
(3)
P 		1251.4
(-0.4)
P 		1317.8
(0.1)
P 		878.2
(-3)
P 		1405.4
(0.7)
P 		1244.8
(-0.5)
P 		864
avr 1323
(0.3) 		1501.7
(3) 		1106.1
(-3) 		1184.5
(-1.8) 		1481.7
(2.7) 		1187.4
(-1.8) 		396
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193064_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8789
Sequence Type Exemplar sequence
Representative Public ID Y41E3.10 NCBI
Target Description Y41E3.10 /REP_DB=WormBase Gene ID /WP=CE18378 /TR=Q9U2H9 /GB=CAB63360.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Elongation factor 1 (beta-delta chain)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070415 NCBI Caenorhabditis elegans Y41E3.10 (Y41E3.10) mRNA, complete cds. 11/11 None
SNAP00000001444 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15037311:15039330:1 10/11 None
GENEFINDER00000001474 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15029161:15039330:1 10/11 None
Y41E3.10 ENSEMBL cdna:known chromosome:CEL140:IV:15037293:15039654:1 gene:Y41E3.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15037126-15039336(+) 100.0 100.0
Public Domain and Genome References
Gene Title Elongation factor 1 (beta/delta chain)
Ensembl Y41E3.10
Entrez Gene 178419 Entrez gene
SwissProt Q9U2H9 EMBL-EBI
WormBase CE37568 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591366_AT similar to eukaryotic translation elongation factor 1 delta cfa
CANINE:1589229_S_AT similar to eukaryotic translation elongation factor 1 delta cfa
CANINE_2:CFA.18655.1.S1_S_AT similar to eukaryotic translation elongation factor 1 delta cfa
CANINE_2:CFAAFFX.2866.1.S1_S_AT similar to eukaryotic translation elongation factor 1 delta cfa
DROSOPHILA_2:1632267_A_AT dm
DROSGENOME1:153449_AT dm
HG-U133A_2:203113_S_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-U133A:203113_S_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-U133_PLUS_2:203113_S_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-FOCUS:203113_S_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HUGENEFL:Z21507_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
U133_X3P:G4503478_3P_X_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
U133_X3P:HS.223241.1.A1_3P_X_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-U95AV2:41256_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-U95D:72684_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-U95E:77358_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-U95E:77361_G_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-U95E:89262_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
U133_X3P:HS.223241.3.A1_3P_AT Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-U133A_2:213087_S_AT Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-U133_PLUS_2:213087_S_AT Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-U133A:213087_S_AT Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-U133A_2:214395_X_AT Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-U133_PLUS_2:214395_X_AT Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-U133A:214395_X_AT Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
HG-U95E:86001_AT Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) hs
MOUSE430_2:1449506_A_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MOE430A:1449506_A_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MOUSE430A_2:1449506_A_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MU11KSUBA:AA253918_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MU11KSUBB:MSA.12983.0_F_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MU11KSUBB:MSA.12025.0_F_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MG-U74AV2:160129_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MOE430A:1428135_A_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MOUSE430A_2:1428135_A_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MOUSE430_2:1428135_A_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MOE430A:1439439_X_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MOUSE430A_2:1439439_X_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MOUSE430_2:1439439_X_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MOE430B:1459754_X_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MOUSE430_2:1459754_X_AT eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) mm
MU11KSUBB:MSA.38819.0_S_AT Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein), mRNA (cDNA clone IMAGE:3482148) mm
MU19KSUBC:TC40245_AT Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein), mRNA (cDNA clone IMAGE:3482148) mm
MU19KSUBC:TC40247_F_AT Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein), mRNA (cDNA clone IMAGE:3482148) mm
MU19KSUBC:TC40247_R_AT Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein), mRNA (cDNA clone IMAGE:3482148) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6414 translational elongation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5853 eukaryotic translation elongation factor 1 complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3746 translation elongation factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE56114 Hypothetical protein CBG23720 [Caenorhabditis briggsae] 0.0
blast CAE68125 Hypothetical protein CBG13770 [Caenorhabditis briggsae] 0.0
blast CAB63365 Hypothetical protein Y41E3.9 [Caenorhabditis elegans] ref|NP_502814.1| Y41E3.9 [Caenorhabditis elegans] 0.0
blast CAE56114 Hypothetical protein CBG23720 [Caenorhabditis briggsae] 1.0E-142
blast CAB63360 Hypothetical protein Y41E3.10 [Caenorhabditis elegans] ref|NP_502816.2| Y41E3.10 [Caenorhabditis elegans] sp|Q9U2H9|EF1B2_CAEEL Probable elongation factor 1-beta/1-delta 2 (EF-1-beta/delta 2) 1.0E-119
blast CAB63360 Hypothetical protein Y41E3.10 [Caenorhabditis elegans] ref|NP_502816.2| Y41E3.10 [Caenorhabditis elegans] sp|Q9U2H9|EF1B2_CAEEL Probable elongation factor 1-beta/1-delta 2 (EF-1-beta/delta 2) 4.0E-58
blast CAE75034 Hypothetical protein CBG22942 [Caenorhabditis briggsae] 1.0E-49
blast AAA28051 Hypothetical protein F54H12.6 [Caenorhabditis elegans] ref|NP_498737.1| F54H12.6 [Caenorhabditis elegans] sp|P34460|EF1B1_CAEEL Probable elongation factor 1-beta/1-delta 1 (EF-1-beta/delta 1) 4.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR001326 EMBL-EBI Elongation factor 1, beta/beta/delta chain 6.9E-48
Pfam IPR001326 EMBL-EBI Elongation factor 1, beta/beta/delta chain 6.9E-48
Pfam IPR001326 EMBL-EBI Elongation factor 1, beta/beta/delta chain 6.9E-48
Sequence
Target Sequence 
>C. ELEGANS:193064_AT
caatgccaagcatgccgctgataaggctttgaacaaagaaggaggagaggacgtctccaa
gcttcgcgaagagcactctgctcttgccaagaaggtcgacgacttggccagtcttgtcgc
tgagcttcaacttcaactctcgactcttcgccaaggacagaccagctccgtcgctgctcc
agctgccgcaccagccgctgctaaagaggaagctgccggagacgacgacttcgatctttt
cggatccgaagacgaggaagaggacgaggagaagaagaaggtcgttgaagagcgccttgc
tgcctacgccgcaaagaaggccacaaaggccggcccaatcgccaagtcctcggtcatcct
tgacgtaaagccatgggatgacgagactgatctcggagagatggagaagctcgtcagatc
catcgagatggacggacttgtctggggaggtgccaagctgatcccaatcggatacggaat
caagaaactccagatcatcaccgtcatcgaggatctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGCCAAGCATGCCGCTGATAAG 271 183 261 Antisense
ACGTCTCCAAGCTTCGCGAAGAGCA 238 95 311 Antisense
AGCACTCTGCTCTTGCCAAGAAGGT 399 77 332 Antisense
GTCGACGACTTGGCCAGTCTTGTCG 500 473 355 Antisense
AGTCTTGTCGCTGAGCTTCAACTTC 534 61 370 Antisense
TGAGCTTCAACTTCAACTCTCGACT 487 567 381 Antisense
TCTCGACTCTTCGCCAAGGACAGAC 504 611 398 Antisense
GCTGCCTACGCCGCAAAGAAGGCCA 572 297 559 Antisense
GTCTGGGGAGGTGCCAAGCTGATCC 31 471 700 Antisense
AAGAAACTCCAGATCATCACCGTCA 397 153 742 Antisense
TCATCACCGTCATCGAGGATCTCAA 8 619 755 Antisense
Sequence Source Affymetrix Proprietary Database