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[193063_at]

Description F26F4.9 /REP_DB=WormBase Gene ID /WP=CE04447 /TR=Q19822 /GB=AAA91225.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=ankyrin and desmoplakin repeat regions
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 73      6grp_total > 75      4grp_total > 16      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 424.8
(-3)
P 		500.6
(-0.5)
P 		498.3
(-0.6)
P 		610.1
(3)
P 		185
B 450.1
(-3)
P 		465.7
(-2.3)
P 		513.4
(-0.2)
P 		586.8
(3)
P 		137
C 411
(-3)
P 		451
(-1.8)
P 		522.5
(0.3)
P 		615.5
(3)
P 		205
avr 428.6
(-3) 		472.4
(-1.5) 		511.4
(-0.2) 		604.1
(3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 572.9
(0.9)
P 		409.5
(-2.9)
P 		535.2
(0.1)
P 		660.9
(3)
P 		403.9
(-3)
P 		591.4
(1.4)
P 		257
B 474
(-0.7)
P 		392.5
(-3)
P 		559.2
(1.8)
P 		538.7
(1.2)
P 		520.3
(0.6)
P 		603
(3)
P 		211
C 422.7
(-1.9)
P 		371.7
(-3)
P 		512.9
(0.1)
P 		620.5
(2.5)
P 		503.9
(-0.1)
P 		641.5
(3)
P 		270
avr 489.9
(-0.3) 		391.2
(-3) 		535.8
(0.9) 		606.7
(2.9) 		476
(-0.7) 		612
(3) 		221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 154.7
(3)
P 		108.7
(-1.2)
P 		130.3
(0.8)
P 		89.3
(-3)
P 		65
B 143.5
(3)
P 		115
(-3)
P 		119
(-2.2)
P 		125
(-0.9)
P 		29
C 136
(-0.5)
P 		129.7
(-1)
P 		182.1
(3)
P 		103.8
(-3)
P 		78
avr 144.7
(3) 		117.8
(-1.2) 		143.8
(2.9) 		106
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 105.6
(-3)
P 		145.6
(0.9)
P 		116.6
(-1.9)
P 		167.6
(3)
P 		121.9
(-1.4)
P 		144
(0.7)
P 		62
B 164.9
(-0.8)
P 		130.6
(-3)
P 		135.8
(-2.7)
P 		142.7
(-2.2)
P 		211.4
(2.1)
P 		224.8
(3)
P 		94
C 156.7
(-0.4)
P 		113.4
(-3)
P 		130.5
(-2)
P 		124.8
(-2.3)
P 		163.1
(-0.1)
P 		214.7
(3)
P 		101
avr 142.4
(-1.7) 		129.9
(-2.8) 		127.6
(-3) 		145
(-1.4) 		165.5
(0.4) 		194.5
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6893
Sequence Type Exemplar sequence
Representative Public ID F26F4.9 NCBI
Target Description F26F4.9 /REP_DB=WormBase Gene ID /WP=CE04447 /TR=Q19822 /GB=AAA91225.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=ankyrin and desmoplakin repeat regions
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065629(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065629 NCBI Caenorhabditis elegans F26F4.12 (F26F4.12) mRNA, complete cds. 11/11 None
SNAP00000005754 ENSEMBL cdna:SNAP chromosome:CEL140:III:4909013:4909999:-1 11/11 None
GENEFINDER00000005763 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4909013:4909999:-1 11/11 None
F26F4.12 ENSEMBL cdna:known chromosome:CEL140:III:4908943:4909999:-1 gene:F26F4.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4909012-4912399(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26F4.12
Entrez Gene 175656 Entrez gene
SwissProt Q95QI6 EMBL-EBI
WormBase CE28922 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.2733.1.A1_AT similar to fetal globin inducing factor cfa
CANINE_2:CFAAFFX.7148.1.S1_AT similar to fetal globin inducing factor cfa
DROSOPHILA_2:1632632_AT dm
DROSGENOME1:144232_AT dm
CHICKEN:GGA.11785.1.S1_A_AT ankyrin repeat domain 49 gga
HG-U133_PLUS_2:219069_AT ankyrin repeat domain 49 hs
HG-U133A:219069_AT ankyrin repeat domain 49 hs
HG-U133A_2:219069_AT ankyrin repeat domain 49 hs
HU35KSUBB:RC_R70005_AT ankyrin repeat domain 49 hs
U133_X3P:G8923180_3P_AT ankyrin repeat domain 49 hs
HG-U95B:44033_AT ankyrin repeat domain 49 hs
MG-U74AV2:92468_AT ankyrin repeat domain 49 mm
MG-U74BV2:163283_AT ankyrin repeat domain 49 mm
MOE430A:1423421_AT ankyrin repeat domain 49 mm
MOUSE430A_2:1423421_AT ankyrin repeat domain 49 mm
MOUSE430_2:1423421_AT ankyrin repeat domain 49 mm
MOE430B:1458509_AT Globin inducing factor, fetal, mRNA (cDNA clone MGC:25252 IMAGE:3969390) mm
MOUSE430_2:1458509_AT Globin inducing factor, fetal, mRNA (cDNA clone MGC:25252 IMAGE:3969390) mm
MU19KSUBA:TC21325_AT Globin inducing factor, fetal, mRNA (cDNA clone MGC:25252 IMAGE:3969390) mm
MU19KSUBB:TC25828_AT Globin inducing factor, fetal, mRNA (cDNA clone MGC:25252 IMAGE:3969390) mm
RAE230B:1383548_AT Similar to hypothetical protein FLJ20189 (predicted) rn
RAT230_2:1383548_AT Similar to hypothetical protein FLJ20189 (predicted) rn
RG-U34B:RC_AA924108_AT Similar to hypothetical protein FLJ20189 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK93848 Hypothetical protein F26F4.12 [Caenorhabditis elegans] ref|NP_498030.1| F26F4.12 [Caenorhabditis elegans] 1.0E-123
blast T16173 hypothetical protein F26F4.9 - Caenorhabditis elegans 1.0E-123
blast AAK93848 Hypothetical protein F26F4.12 [Caenorhabditis elegans] ref|NP_498030.1| F26F4.12 [Caenorhabditis elegans] 1.0E-120
blast T16173 hypothetical protein F26F4.9 - Caenorhabditis elegans 1.0E-120
blast CAE71295 Hypothetical protein CBG18184 [Caenorhabditis briggsae] 7.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 8.9E-8
Pfam IPR002110 EMBL-EBI Ankyrin 5.9E-7
Pfam IPR002110 EMBL-EBI Ankyrin 5.9
Pfam IPR002110 EMBL-EBI Ankyrin 0.81
Pfam IPR002110 EMBL-EBI Ankyrin 8.9E-8
Pfam IPR002110 EMBL-EBI Ankyrin 5.9E-7
Pfam IPR002110 EMBL-EBI Ankyrin 5.9
Pfam IPR002110 EMBL-EBI Ankyrin 0.81
Sequence
Target Sequence 
>C. ELEGANS:193063_AT
gtggctgactgctgctgaagatggtgagctcgaattggtcaaggttctattggaggagac
accgaatttgctgaattctcgagatgccgatggatacacagctcttcatcgtgcttcata
caacaatcattcaccaatagtagatcaccttctgttatctggagccaataaagagtcaaa
aacgaatgaaggatggactccattactttcagccagtaattgggcgaattttgaagtagt
tgggcgtcttttgagtcatggatccgatgtcaatgctctctccaatggaaatttgacagc
tcttcacttggcagtgaatagtcgaagtgaagaaccagaaaatgtgtacatgactgtcag
atacctcttacaagctccaggaatcgacgctggagtcatagctggtaacggagatacccc
cttgatgatggctcggcgaacttctgaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCTGACTGCTGCTGAAGATGGT 603 491 843 Antisense
TGCCGATGGATACACAGCTCTTCAT 417 585 927 Antisense
TCACCTTCTGTTATCTGGAGCCAAT 49 627 987 Antisense
AGGATGGACTCCATTACTTTCAGCC 256 57 1032 Antisense
GTAGTTGGGCGTCTTTTGAGTCATG 143 457 1078 Antisense
TGGATCCGATGTCAATGCTCTCTCC 222 551 1101 Antisense
GAAATTTGACAGCTCTTCACTTGGC 298 363 1130 Antisense
GACTGTCAGATACCTCTTACAAGCT 582 375 1194 Antisense
GAATCGACGCTGGAGTCATAGCTGG 494 329 1223 Antisense
AGCTGGTAACGGAGATACCCCCTTG 361 65 1242 Antisense
TGATGGCTCGGCGAACTTCTGAACA 381 567 1268 Antisense
Sequence Source Affymetrix Proprietary Database