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[193062_s_at] Adaptor complexes medium subunit family

Description C27H6.1 /REP_DB=WormBase Gene ID /WP=CE08425 /TR=P90761 /GB=CAB02795.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Adaptor complexes medium subunit family
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      4grp_highest_8_8 > 58      4grp_high_8_8 > 32      6grp_highest_nonorm > 41      6grp_total > 25      4grp_total > 47      6grp_highest_sub > 02      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1256
1 2 3 4 range
A 1190.5
(3)
P 		533.2
(-1.8)
P 		373.8
(-3)
P 		466.6
(-2.3)
P 		817
B 1586.2
(3)
P 		507.4
(-2.2)
P 		330.4
(-3)
P 		492.7
(-2.2)
P 		1256
C 1077.5
(3)
P 		498.4
(-2.1)
P 		494.3
(-2.2)
P 		401.8
(-3)
P 		676
avr 1284.7
(3) 		513
(-2.2) 		399.5
(-3) 		453.7
(-2.6) 		885

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 922
1 2 3 4 5 6 range
A 833.9
(0.2)
P 		1168
(3)
P 		493
(-2.6)
P 		664.8
(-1.2)
P 		443.3
(-3)
P 		442.3
(-3)
P 		726
B 1246
(3)
P 		1142.3
(2.3)
P 		897.1
(0.7)
P 		551.7
(-1.5)
P 		371.5
(-2.7)
P 		323.7
(-3)
P 		922
C 921.2
(1)
P 		1197.1
(3)
P 		670.1
(-0.8)
P 		677.9
(-0.8)
P 		371.3
(-3)
P 		392.7
(-2.8)
P 		826
avr 1000.4
(1.7) 		1169.1
(3) 		686.7
(-0.7) 		631.5
(-1.1) 		395.4
(-2.9) 		386.2
(-3) 		783
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 438
1 2 3 4 range
A 433.5
(3)
P 		115.7
(-2.2)
P 		97.7
(-2.5)
P 		68.3
(-3)
P 		365
B 505.8
(3)
P 		125.3
(-2.3)
P 		76.6
(-3)
P 		105
(-2.6)
P 		429
C 356.7
(3)
P 		143.3
(-1.4)
P 		172.3
(-0.8)
P 		67.8
(-3)
P 		289
avr 432
(3) 		128.1
(-2.2) 		115.5
(-2.4) 		80.4
(-3) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 153.7
(-2.1)
P 		415.4
(3)
P 		107.4
(-3)
P 		168.6
(-1.8)
P 		133.8
(-2.5)
P 		107.7
(-3)
P 		308
B 433.6
(3)
P 		380.2
(2)
P 		217.8
(-1.1)
P 		146.1
(-2.5)
P 		150.9
(-2.4)
P 		120.7
(-3)
P 		313
C 341.5
(2.4)
P 		365.3
(3)
P 		170.5
(-1.8)
P 		136.3
(-2.6)
P 		120.1
(-3)
P 		131.5
(-2.7)
P 		245
avr 309.6
(1.3) 		387
(3) 		165.2
(-2) 		150.3
(-2.3) 		134.9
(-2.7) 		120
(-3) 		267
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193062_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11413
Sequence Type Exemplar sequence
Representative Public ID C27H6.1 NCBI
Target Description C27H6.1 /REP_DB=WormBase Gene ID /WP=CE08425 /TR=P90761 /GB=CAB02795.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Adaptor complexes medium subunit family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073165 NCBI Caenorhabditis elegans AdaPTin or adaptin-related protein family member (apt-10) (apt-10) mRNA, complete cds. 11/11 None
SNAP00000032969 ENSEMBL cdna:SNAP chromosome:CEL140:V:9969263:9975319:-1 11/11 None
GENEFINDER00000032981 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9969263:9975319:-1 11/11 None
C27H6.1 ENSEMBL cdna:known chromosome:CEL140:V:9968986:9978700:-1 gene:C27H6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9969262-9978700(-) 98.97 100.0
Public Domain and Genome References
Gene Title Adaptor complexes medium subunit family
Gene Symbol apt-10
Ensembl C27H6.1
Entrez Gene 179387 Entrez gene
SwissProt P90761 EMBL-EBI
WormBase CE08425 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGAAFFX.6689.1.S1_AT similar to RIKEN cDNA 4933401N24 gga
HG-U133_PLUS_2:227461_AT stonin 2 hs
HG-U133B:227461_AT stonin 2 hs
HU35KSUBA:RC_AA019498_AT stonin 2 hs
U133_X3P:HS2.336428.1.A1_3P_A_AT stonin 2 hs
U133_X3P:HS.23071.0.A1_3P_AT stonin 2 hs
HG-U133_PLUS_2:1552543_A_AT stonin 2 hs
HG-U95C:60855_AT stonin 2 hs
MOE430B:1459153_AT RIKEN cDNA 4933401N24 gene mm
MOUSE430_2:1459153_AT RIKEN cDNA 4933401N24 gene mm
MG-U74CV2:132032_AT RIKEN cDNA 4933401N24 gene (4933401N24Rik), mRNA mm
MG-U74CV2:134159_AT RIKEN cDNA 4933401N24 gene (4933401N24Rik), mRNA mm
MU19KSUBA:TC19534_AT RIKEN cDNA 4933401N24 gene (4933401N24Rik), mRNA mm
RAE230B:1380981_AT Similar to stonin 2; homolog of stoned B (Drosophila) (predicted) rn
RAT230_2:1380981_AT Similar to stonin 2; homolog of stoned B (Drosophila) (predicted) rn
RAE230B:1398651_AT Similar to stonin 2; homolog of stoned B (Drosophila) (predicted) rn
RAT230_2:1398651_AT Similar to stonin 2; homolog of stoned B (Drosophila) (predicted) rn
RG-U34B:RC_AI045148_AT Similar to stonin 2; homolog of stoned B (Drosophila) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB02795 Hypothetical protein C27H6.1 [Caenorhabditis elegans] ref|NP_505566.1| AdaPTin or adaptin-related protein family member (apt-10) [Caenorhabditis elegans] sp|P90761|STNB_CAEEL Putative stoned B-like protein (Unc-41) 0.0
blast CAE72291 Hypothetical protein CBG19421 [Caenorhabditis briggsae] 0.0
blast EAA06689 ENSANGP00000022043 [Anopheles gambiae str. PEST] ref|XP_310748.2| ENSANGP00000022043 [Anopheles gambiae str. PEST] 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:193062_S_AT
gatcgacttctaggagcagttcaagcaagtgaacctaatcttattgaatgtgcaattgga
gaggctaaatatgaacatgtatatcgttcacttgtatggaggattccaagacttccagaa
aaacatcatgcagcttacaaatctcatttactaaaatgccgatttgaactgtcatcgttc
gatttaatgccagaagagtttcttccaagatgtgatgttgatttcacaatgcctctggca
actgtctcgaacactgtagtaagatcagtatcagttgaacaacatgaagatagtgatcgc
gtggaaaagtttgtcagatatgttgctaaatatcagtataaggttgaaatcgactacgtg
caatgtgccgatcttgatctcgacatggcggatccatcagtaaatcctgaagcagcagca
gctccagttccagaacttcatcaaccaacatttaatccatctacccaagagtctgatact
caacaaggctaccgaattgatttcaacgaagccgaaatgggcggttcaaatcgtcgcgac
gactcgagttccgatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGACTTCTAGGAGCAGTTCAAG 421 417 4369 Antisense
GCCGATTTGAACTGTCATCGTTCGA 592 281 4526 Antisense
GATTTCACAATGCCTCTGGCAACTG 252 429 4588 Antisense
CTGGCAACTGTCTCGAACACTGTAG 306 241 4603 Antisense
CGTGCAATGTGCCGATCTTGATCTC 446 245 4725 Antisense
GATCTCGACATGGCGGATCCATCAG 685 417 4744 Antisense
GCAGCTCCAGTTCCAGAACTTCATC 534 313 4786 Antisense
CCAACATTTAATCCATCTACCCAAG 463 275 4813 Antisense
GTCTGATACTCAACAAGGCTACCGA 536 471 4839 Antisense
TGGGCGGTTCAAATCGTCGCGACGA 560 553 4886 Antisense
TCGCGACGACTCGAGTTCCGATGAA 86 601 4902 Antisense
Sequence Source Affymetrix Proprietary Database