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[193061_at] PDZ domain (Also known as DHR or GLGF).

Description ZK849.1 /REP_DB=WormBase Gene ID /WP=CE16747 /TR=O18301 /GB=CAB05025.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF).
Cluster 6grp_total > 79      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 39.1
(-3)
A 		62.3
(3)
A 		40.9
(-2.5)
A 		61.8
(2.9)
A 		23
B 27.1
(-3)
A 		32.3
(-2.2)
A 		67.6
(3)
A 		33.6
(-2)
A 		41
C 35.2
(-3)
A 		71
(2.6)
A 		45.3
(-1.4)
A 		73.5
(3)
A 		38
avr 33.8
(-3) 		55.2
(2.7) 		51.3
(1.7) 		56.3
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 13.3
(-1.8)
A 		41.9
(2)
A 		3.9
(-3)
A 		18.9
(-1)
A 		37.5
(1.4)
A 		49.7
(3)
A 		46
B 40.1
(-0.3)
A 		38.1
(-0.6)
A 		15.2
(-3)
A 		38.1
(-0.6)
A 		42.6
(-0.1)
A 		71.5
(3)
A 		56
C 42
(0.2)
A 		48.1
(0.7)
A 		56.6
(1.4)
A 		4.8
(-3)
A 		56.3
(1.4)
A 		75.1
(3)
A 		70
avr 31.8
(-1.5) 		42.7
(-0) 		25.2
(-2.4) 		20.6
(-3) 		45.5
(0.3) 		65.4
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.2
(3)
A 		13.5
(2.2)
A 		10.7
(-1)
A 		9
(-3)
A 		5
B 8.6
(-2)
A 		8
(-2.4)
A 		15.7
(3)
A 		7.2
(-3)
A 		9
C 11.6
(-3)
A 		20.4
(3)
A 		15.8
(-0.1)
A 		12.4
(-2.5)
A 		9
avr 11.5
(-0.4) 		14
(2.9) 		14.1
(3) 		9.5
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 2.4
(-2.4)
A 		14.9
(3)
A 		0.9
(-3)
A 		4.8
(-1.3)
A 		11.3
(1.5)
A 		12.1
(1.8)
A 		14
B 13.9
(-0.3)
A 		12.7
(-0.7)
A 		3.7
(-3)
A 		10.1
(-1.3)
A 		17.3
(0.5)
A 		26.7
(3)
A 		23
C 15.6
(0.6)
A 		14.7
(0.4)
A 		14.4
(0.3)
A 		1
(-3)
A 		18.2
(1.3)
A 		25.1
(3)
A 		24
avr 10.6
(-1) 		14.1
(0.3) 		6.3
(-2.6) 		5.3
(-3) 		15.6
(0.9) 		21.3
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1602
Sequence Type Exemplar sequence
Representative Public ID ZK849.1 NCBI
Target Description ZK849.1 /REP_DB=WormBase Gene ID /WP=CE16747 /TR=O18301 /GB=CAB05025.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF).
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061075 NCBI Caenorhabditis elegans ZK849.1 (ZK849.1) mRNA, complete cds. 11/11 None
SNAP00000021687 ENSEMBL cdna:SNAP chromosome:CEL140:I:14190905:14193761:-1 11/11 None
GENEFINDER00000021696 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14190905:14196411:-1 10/11 None
ZK849.1 ENSEMBL cdna:known chromosome:CEL140:I:14190905:14193755:-1 gene:ZK849.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14190835-14193644(-) 100.0 100.0
Public Domain and Genome References
Gene Title PDZ domain (Also known as DHR or GLGF).
Ensembl ZK849.1
Entrez Gene 173288 Entrez gene
SwissProt O18301 EMBL-EBI
WormBase CE16747 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05025 Hypothetical protein ZK849.1 [Caenorhabditis elegans] ref|NP_493476.1| ZK849.1 [Caenorhabditis elegans] 0.0
blast CAB05026 Hypothetical protein ZK849.2a [Caenorhabditis elegans] ref|NP_001021877.1| ZK849.2a [Caenorhabditis elegans] 0.0
blast CAI79281 Hypothetical protein ZK849.2b [Caenorhabditis elegans] ref|NP_001021878.1| ZK849.2b [Caenorhabditis elegans] 0.0
blast CAE71790 Hypothetical protein CBG18798 [Caenorhabditis briggsae] 0.0
blast CAE71791 Hypothetical protein CBG18799 [Caenorhabditis briggsae] 1.0E-135
blast CAE71791 Hypothetical protein CBG18799 [Caenorhabditis briggsae] 1.0E-129
blast NP_001017408 golgi associated PDZ and coiled-coil motif containing isoform b [Homo sapiens] emb|CAI43172.1| golgi associated PDZ and coiled-coil motif containing [Homo sapiens] emb|CAH70198.1| golgi associated PDZ and coiled-coil motif containing [Homo sapiens] gb|AAL47160.1| CFTR-associated ligand [Homo sapiens] gb|AAK57733.1| fused in glioblastoma [Homo sapiens] gb|AAH09553.1| Golgi associated PDZ and coiled-coil motif containing, isoform b [Homo sapiens] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 3.7E-11
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 3.7E-11
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 5.6E-16
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 3.7E-11
Sequence
Target Sequence 
>C. ELEGANS:193061_AT
gcaaccaggttctacgcaagggagctggcagcaatgcgacagatgatggatttggtgcgc
aacgcggcaacgatcgagtcggccgtcaaatcgaaactgtgggacgagatcgagaaggag
aaccgcttgttgcgtctcaacacgctttggctcatcaatcggatcaactcgtcggacctt
ggtgatgctgcatttgagaacggagacgattggcagagctctccgcggctcgtgattctc
atgagagagcatatcaatcaggggcttgggctcgagattacgggaggttgtgatcagttc
cgtccggtcgtggtcactgggaagttgaagcggtcgatggcggacgatgatcagctccgt
gtgaacgaccgtatcttggcgatcgatgggaccttcgtgaccaacaccaccacccacgcc
gaggttatggaaatgctcgagaatgagagcgccaaggatttcatctcgctgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACCAGGTTCTACGCAAGGGAGC 76 317 424 Antisense
CAACGCGGCAACGATCGAGTCGGCC 309 187 483 Antisense
GAAGGAGAACCGCTTGTTGCGTCTC 36 335 537 Antisense
TTGCGTCTCAACACGCTTTGGCTCA 505 701 553 Antisense
GGCTCATCAATCGGATCAACTCGTC 4 539 572 Antisense
CTCGTCGGACCTTGGTGATGCTGCA 346 233 591 Antisense
CGGGAGGTTGTGATCAGTTCCGTCC 150 243 704 Antisense
TGATCAGCTCCGTGTGAACGACCGT 299 565 771 Antisense
GAACGACCGTATCTTGGCGATCGAT 661 347 786 Antisense
TGGCGATCGATGGGACCTTCGTGAC 37 541 800 Antisense
CGCCAAGGATTTCATCTCGCTGATT 173 257 873 Antisense
Sequence Source Affymetrix Proprietary Database