[Home] | [Total List]

[193053_at] GTP-binding ADP-ribosylation factor

Description F54C9.10 /REP_DB=WormBase Gene ID /WP=CE02250 /TR=SW:Q20758 /GB=CAA90255.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=GTP-binding ADP-ribosylation factor
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 73      6grp_total > 40      4grp_total > 50      6grp_highest_sub > 04      6grp_cgc > 83      6grp_high1_sub > 03_04      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 377
1 2 3 4 range
A 493
(-3)
P 		809
(3)
P 		549.2
(-1.9)
P 		497.2
(-2.9)
P 		316
B 524.9
(0.7)
P 		582.6
(3)
P 		540.3
(1.3)
P 		431.7
(-3)
P 		151
C 480.3
(-3)
P 		511.9
(-1.7)
P 		629.6
(3)
P 		495.9
(-2.4)
P 		149
avr 499.4
(-2.1) 		634.5
(3) 		573
(0.7) 		474.9
(-3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 458
(-2.2)
P 		555.5
(-0.4)
P 		726.8
(2.9)
P 		731.7
(3)
P 		418.4
(-3)
P 		507.5
(-1.3)
P 		313
B 533
(-2.3)
P 		680.6
(3)
P 		514.2
(-3)
P 		541.5
(-2)
P 		562.2
(-1.3)
P 		525.7
(-2.6)
P 		166
C 663.9
(3)
P 		576.4
(0.1)
P 		580.3
(0.3)
P 		597.1
(0.8)
P 		553.9
(-0.6)
P 		480.2
(-3)
P 		184
avr 551.6
(-0.6) 		604.2
(2) 		607.1
(2.2) 		623.4
(3) 		511.5
(-2.6) 		504.5
(-3) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 179.5
(3)
P 		175.6
(2.8)
P 		143.6
(1)
P 		72.8
(-3)
P 		107
B 167.4
(3)
P 		143.9
(1.1)
P 		125.2
(-0.4)
P 		92
(-3)
P 		75
C 159
(0.3)
P 		147.2
(-0.2)
P 		219.4
(3)
P 		83.6
(-3)
P 		136
avr 168.6
(3) 		155.6
(2.1) 		162.7
(2.6) 		82.8
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 84.4
(-3)
P 		197.6
(3)
P 		158.3
(0.9)
P 		185.6
(2.4)
P 		126.3
(-0.8)
P 		123.6
(-0.9)
P 		113
B 185.4
(0.5)
P 		226.6
(2.9)
P 		124.9
(-3)
P 		143.4
(-1.9)
P 		228.4
(3)
P 		196
(1.1)
P 		104
C 246.1
(3)
P 		175.9
(-0.3)
P 		147.7
(-1.7)
P 		120.1
(-3)
P 		179.2
(-0.2)
P 		160.8
(-1.1)
P 		126
avr 172
(0) 		200
(3) 		143.6
(-3) 		149.7
(-2.4) 		178
(0.7) 		160.1
(-1.2) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193053_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3146
Sequence Type Exemplar sequence
Representative Public ID F54C9.10 NCBI
Target Description F54C9.10 /REP_DB=WormBase Gene ID /WP=CE02250 /TR=SW:Q20758 /GB=CAA90255.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=GTP-binding ADP-ribosylation factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063415 NCBI Caenorhabditis elegans ARF-Like family member (arl-1) (arl-1) mRNA, complete cds. 11/11 None
GENEFINDER00000013444 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8581932:8582579:1 11/11 None
F54C9.10 ENSEMBL cdna:known chromosome:CEL140:II:8581922:8582965:1 gene:F54C9.10 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013427 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8581928-8582576(+) 100.0 100.0
Public Domain and Genome References
Gene Title GTP-binding ADP-ribosylation factor
Gene Symbol arl-1
Ensembl F54C9.10
Entrez Gene 174375 Entrez gene
SwissProt Q20758 EMBL-EBI
WormBase CE02250 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20378_G_AT ADP-ribosylation factor 3 (ARF3) at
ATGENOME1:20377_AT ADP-ribosylation factor 3 (ARF3) at
ATH1-121501:263529_AT ADP-ribosylation factor 3 (ARF3) at
CANINE:1604949_S_AT similar to ADP-ribosylation factor-like 1 cfa
CANINE:1598570_S_AT similar to ADP-ribosylation factor-like 1 cfa
CANINE_2:CFA.10870.1.S1_AT similar to ADP-ribosylation factor-like 1 cfa
CANINE_2:CFAAFFX.11375.1.S1_S_AT similar to ADP-ribosylation factor-like 1 cfa
DROSOPHILA_2:1636130_AT Arflike at 72A dm
DROSGENOME1:143077_AT Arflike at 72A dm
CHICKEN:GGA.4764.1.S1_AT similar to ADP-ribosylation factor-like 1 gga
CHICKEN:GGA.4764.2.S1_A_AT similar to ADP-ribosylation factor-like 1 gga
HG-U133A:201659_S_AT ADP-ribosylation factor-like 1 hs
HG-U133_PLUS_2:201659_S_AT ADP-ribosylation factor-like 1 hs
HG-U133A_2:201659_S_AT ADP-ribosylation factor-like 1 hs
HG-FOCUS:201659_S_AT ADP-ribosylation factor-like 1 hs
HU35KSUBA:D31161_S_AT ADP-ribosylation factor-like 1 hs
HU35KSUBD:RC_AA406478_AT ADP-ribosylation factor-like 1 hs
HUGENEFL:L28997_AT ADP-ribosylation factor-like 1 hs
U133_X3P:G4755126_3P_A_AT ADP-ribosylation factor-like 1 hs
U133_X3P:HS.242894.0.S3_3P_AT ADP-ribosylation factor-like 1 hs
U133_X3P:HS.242894.0.S2_3P_AT ADP-ribosylation factor-like 1 hs
HG-U133A_2:201657_AT ADP-ribosylation factor-like 1 hs
HG-U133_PLUS_2:201657_AT ADP-ribosylation factor-like 1 hs
HG-U133A:201657_AT ADP-ribosylation factor-like 1 hs
HG-U133A_2:201658_AT ADP-ribosylation factor-like 1 hs
HG-U133_PLUS_2:201658_AT ADP-ribosylation factor-like 1 hs
HG-U133A:201658_AT ADP-ribosylation factor-like 1 hs
HG-U95AV2:37296_AT ADP-ribosylation factor-like 1 hs
HG-U95C:64901_AT ADP-ribosylation factor-like 1 hs
HG-U95E:91070_AT ADP-ribosylation factor-like 1 hs
MOE430A:1451025_AT ADP-ribosylation factor-like 1 mm
MOUSE430A_2:1451025_AT ADP-ribosylation factor-like 1 mm
MOUSE430_2:1451025_AT ADP-ribosylation factor-like 1 mm
MU11KSUBB:MSA.29779.0_S_AT ADP-ribosylation factor-like 1 mm
MU11KSUBB:MSA.7130.0_S_AT ADP-ribosylation factor-like 1 mm
MG-U74AV2:97505_AT ADP-ribosylation factor-like 1 mm
MOE430B:1447090_S_AT ADP-ribosylation factor-like 1 mm
MOUSE430_2:1447090_S_AT ADP-ribosylation factor-like 1 mm
MOE430B:1447089_AT ADP-ribosylation factor-like 1 mm
MOUSE430_2:1447089_AT ADP-ribosylation factor-like 1 mm
MU19KSUBC:TC36908_AT ADP-ribosylation factor-like 1 (Arl1), mRNA mm
MU19KSUBC:TC37649_AT ADP-ribosylation factor-like 1 (Arl1), mRNA mm
RG-U34A:RC_AA875253_AT ADP-ribosylation factor-like 1 rn
RG-U34A:U12402_AT ADP-ribosylation factor-like 1 rn
RAE230A:1371690_AT ADP-ribosylation factor-like 1 rn
RAT230_2:1371690_AT ADP-ribosylation factor-like 1 rn
RAE230A:1387358_AT ADP-ribosylation factor-like 1 rn
RAT230_2:1387358_AT ADP-ribosylation factor-like 1 rn
RG-U34A:RC_AI044423_AT ADP-ribosylation factor-like 1 rn
YEAST_2:1772976_AT Soluble GTPase with a role in regulation of membrane traffic; regulates potassium influx; G protein of the Ras superfamily, similar to ADP-ribosylation factor Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90255 Hypothetical protein F54C9.10 [Caenorhabditis elegans] ref|NP_495816.1| ARF-Like family member (arl-1) [Caenorhabditis elegans] sp|Q20758|ARL1_CAEEL ADP-ribosylation factor-like protein 3.0E-98
blast CAE57578 Hypothetical protein CBG00557 [Caenorhabditis briggsae] 2.0E-97
blast EAL30523 GA19306-PA [Drosophila pseudoobscura] 3.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 7.0E-117
Sequence
Target Sequence 
>C. ELEGANS:193053_AT
taatgtcatattttcgtggcctctttggcgcccgcgaaatgcgtattctcatcttgggac
ttgatggagccggtaaaacgacaattttgtataggctgcaggtcggtgaagttgtgacca
cgattccaacaattggttttaacgtggaacaagtcgagtacaaaaatttgaaattccaag
tctgggatcttggaggacaaacatcgatacggccttattggagatgctattatgcgaata
ctgatgcaatcatttatgttgtggattctgctgatagagatcgagttggaatctctcgtc
aagaacttgcaacaatgctacaagaggatgaacttcaaggagctgttttagcagttttag
ccaataaacaagatattgctggatgtttgactgaaactgaagtgtacaaagcattgggat
tggatgctcttcgtaatcgtaccattcaaattttcaagacatctgcttcaaaaggagaag
ggctcgacccagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGTCATATTTTCGTGGCCTCTT 367 637 23 Antisense
TCTTTGGCGCCCGCGAAATGCGTAT 531 615 44 Antisense
AAATGCGTATTCTCATCTTGGGACT 95 119 59 Antisense
TCTTGGGACTTGATGGAGCCGGTAA 288 605 74 Antisense
ATAGGCTGCAGGTCGGTGAAGTTGT 12 21 113 Antisense
GAAGTTGTGACCACGATTCCAACAA 205 335 130 Antisense
GGACAAACATCGATACGGCCTTATT 424 523 217 Antisense
GGAATCTCTCGTCAAGAACTTGCAA 21 533 310 Antisense
GGAGCTGTTTTAGCAGTTTTAGCCA 104 521 361 Antisense
GATGCTCTTCGTAATCGTACCATTC 614 413 445 Antisense
AAAAGGAGAAGGGCTCGACCCAGCG 450 127 492 Antisense
Sequence Source Affymetrix Proprietary Database