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[193051_at] Fibronectin type III domain (4 domains)

Description ZC374.2 /REP_DB=WormBase Gene ID /WP=CE03804 /TR=Q23266 /GB=CAA96700.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Fibronectin type III domain (4 domains)
Cluster 6grp_high1_10_10 > 03      4grp_high_8_8 > 44      6grp_total > 25      4grp_total > 52      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 273.4
(2.7)
P 		279.6
(3)
P 		248.8
(1.7)
P 		132.1
(-3)
A 		148
B 250.3
(1.6)
P 		312.9
(3)
P 		246.3
(1.5)
P 		47.6
(-3)
A 		265
C 246.5
(0.8)
P 		275
(3)
P 		206
(-2.4)
P 		199
(-3)
P 		76
avr 256.7
(1.8) 		289.2
(3) 		233.7
(1) 		126.2
(-3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 288.9
(3)
P 		203.3
(0.5)
P 		103
(-2.5)
P 		87.2
(-3)
P 		110.9
(-2.3)
P 		85.8
(-3)
P 		203
B 220.8
(3)
P 		178.2
(1.4)
P 		177
(1.4)
P 		90.9
(-1.9)
P 		60.9
(-3)
P 		92.9
(-1.8)
P 		160
C 215.1
(1.6)
P 		256.2
(3)
P 		189.7
(0.8)
P 		77.5
(-2.9)
P 		74.1
(-3)
M 		83.6
(-2.7)
P 		182
avr 241.6
(3) 		212.6
(1.9) 		156.6
(-0.2) 		85.2
(-2.9) 		82
(-3) 		87.4
(-2.8) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 99.5
(3)
P 		60.7
(0.1)
P 		65
(0.4)
P 		19.3
(-3)
A 		80
B 79.8
(3)
P 		77.3
(2.8)
P 		57.1
(1)
P 		10.1
(-3)
A 		70
C 81.6
(3)
P 		79.1
(2.7)
P 		71.8
(1.8)
P 		33.6
(-3)
P 		48
avr 87
(3) 		72.4
(1.7) 		64.6
(1) 		21
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 53.3
(0.8)
P 		72.3
(3)
P 		22.4
(-2.8)
P 		22.1
(-2.9)
P 		33.5
(-1.5)
P 		20.9
(-3)
P 		51
B 76.8
(3)
P 		59.3
(1)
P 		43
(-0.8)
P 		24.1
(-3)
P 		24.7
(-2.9)
P 		34.6
(-1.8)
P 		53
C 79.7
(3)
P 		78.2
(2.9)
P 		48.3
(0.1)
P 		15.6
(-3)
P 		24
(-2.2)
M 		28
(-1.8)
P 		64
avr 69.9
(3) 		69.9
(3) 		37.9
(-0.9) 		20.6
(-3) 		27.4
(-2.2) 		27.8
(-2.1) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193051_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16486
Sequence Type Exemplar sequence
Representative Public ID ZC374.2 NCBI
Target Description ZC374.2 /REP_DB=WormBase Gene ID /WP=CE03804 /TR=Q23266 /GB=CAA96700.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Fibronectin type III domain (4 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077283(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077283 NCBI Caenorhabditis elegans ZC374.2 (ZC374.2) mRNA, complete cds. 11/11 None
GENEFINDER00000006426 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10034766:10047243:-1 11/11 None
ZC374.2 ENSEMBL cdna:known chromosome:CEL140:X:10035811:10047243:-1 gene:ZC374.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006421 2/11 Cross Hyb Matching Probes None
SNAP00000006422 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10035810-10047243(-) 100.0 100.0
Public Domain and Genome References
Gene Title Fibronectin type III domain (4 domains)
Ensembl ZC374.2
Entrez Gene 191148 Entrez gene
SwissProt Q23266 EMBL-EBI
WormBase CE03804 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96700 Hypothetical protein ZC374.2 [Caenorhabditis elegans] ref|NP_509684.1| ZC374.2 [Caenorhabditis elegans] 0.0
blast CAE58749 Hypothetical protein CBG01939 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.9E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 6.3E-7
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.2E-5
Sequence
Target Sequence 
>C. ELEGANS:193051_AT
acgtggccggatatgatgtgtacttaagtcaggataaggacctcccggactctcaatgga
aactcgtgcggctcaacaacagagaatcgcatctttcgctggaggatctcaaaagctcaa
ccatctattttgttcgagtaaatgttcggaacactgacggatcagtgatccgtgctccgt
ctgtttacagattcaagacaattgataacaccgacgaagaggaattcgaaggaaattcgc
ttgcatatcgcaatgttgctccaggagaagttgaaattcgttggacattcccaaaaagca
tacttgacagtgtcattggcgcaactattctatacacaaatcgcaaagacctcactcccg
aacaatggcaaaaaattgaaattgaagattcaaaaaatacgacagttttgctcaaacact
tgactgaaggagtgagatattccgttcaaattatcccaagactgtacaccggagactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTGGCCGGATATGATGTGTACTT 366 95 1277 Antisense
ACCTCCCGGACTCTCAATGGAAACT 417 37 1316 Antisense
AATGGAAACTCGTGCGGCTCAACAA 264 163 1331 Antisense
AATCGCATCTTTCGCTGGAGGATCT 287 169 1361 Antisense
AGCTCAACCATCTATTTTGTTCGAG 268 79 1390 Antisense
CCGTGCTCCGTCTGTTTACAGATTC 28 265 1446 Antisense
GACAGTGTCATTGGCGCAACTATTC 447 369 1582 Antisense
ACACAAATCGCAAAGACCTCACTCC 213 111 1610 Antisense
ACCTCACTCCCGAACAATGGCAAAA 685 87 1625 Antisense
TATTCCGTTCAAATTATCCCAAGAC 665 661 1714 Antisense
CCCAAGACTGTACACCGGAGACTAT 383 39 1731 Antisense
Sequence Source Affymetrix Proprietary Database