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[193049_at]

Description F58G6.5 /REP_DB=WormBase Gene ID /WP=CE27764 /GEN=nhr-34 /TR=SW:Q21006 /GB=CAA92467.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 20      6grp_total > 27      4grp_total > 23      6grp_highest_sub > De      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1155
1 2 3 4 range
A 1596.3
(3)
P 		595.6
(-3)
P 		733
(-2.2)
P 		1583.9
(2.9)
P 		1001
B 1723
(3)
P 		920.1
(-1.9)
P 		733.1
(-3)
P 		1654
(2.6)
P 		990
C 1659.3
(3)
P 		568
(-3)
P 		696.8
(-2.3)
P 		1447.2
(1.8)
P 		1091
avr 1659.5
(3) 		694.6
(-3) 		721
(-2.8) 		1561.7
(2.4) 		965

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1164
1 2 3 4 5 6 range
A 1805.9
(3)
P 		1320.7
(0.4)
P 		843.1
(-2.1)
P 		792
(-2.4)
P 		678.5
(-3)
P 		1118.2
(-0.7)
P 		1127
B 1596.7
(3)
P 		1252.4
(0.8)
P 		904.4
(-1.3)
P 		1020.1
(-0.6)
P 		641.7
(-3)
P 		868.3
(-1.6)
P 		955
C 1608.2
(3)
P 		1154.4
(-0)
P 		825.8
(-2.2)
P 		734.8
(-2.8)
P 		706.3
(-3)
P 		978.5
(-1.2)
P 		902
avr 1670.3
(3) 		1242.5
(0.4) 		857.8
(-1.9) 		849
(-2) 		675.5
(-3) 		988.3
(-1.1) 		995
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 452
1 2 3 4 range
A 581.2
(3)
P 		129.3
(-3)
P 		191.6
(-2.2)
P 		231.9
(-1.6)
P 		452
B 549.5
(3)
P 		227.2
(-2.1)
P 		169.9
(-3)
P 		352.5
(-0.1)
P 		380
C 549.3
(3)
P 		163.3
(-3)
P 		242.8
(-1.8)
P 		244
(-1.7)
P 		386
avr 560
(3) 		173.3
(-3) 		201.4
(-2.6) 		276.1
(-1.4) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 332.9
(0.1)
P 		469.7
(3)
P 		183.6
(-3)
P 		200.9
(-2.6)
P 		204.8
(-2.6)
P 		272.2
(-1.1)
P 		286
B 555.6
(3)
P 		416.9
(0.5)
P 		219.6
(-3)
P 		270.2
(-2.1)
P 		260.7
(-2.3)
P 		323.8
(-1.1)
P 		336
C 596.1
(3)
P 		352.2
(-0.3)
P 		210.2
(-2.2)
P 		147.8
(-3)
P 		228.5
(-1.9)
P 		327.6
(-0.6)
P 		448
avr 494.9
(3) 		412.9
(1.3) 		204.5
(-3) 		206.3
(-3) 		231.3
(-2.4) 		307.9
(-0.9) 		290
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193049_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8492
Sequence Type Exemplar sequence
Representative Public ID F58G6.5 NCBI
Target Description F58G6.5 /REP_DB=WormBase Gene ID /WP=CE27764 /GEN=nhr-34 /TR=SW:Q21006 /GB=CAA92467.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171412(11), NM_001028074(11), NM_069315(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171412 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-34) (nhr-34) mRNA, complete cds. 11/11 None
NM_001028074 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-34) (nhr-34) mRNA, complete cds. 11/11 None
NM_069315 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-34) (nhr-34) mRNA, complete cds. 11/11 None
SNAP00000020770 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9664661:9670035:-1 11/11 None
GENEFINDER00000020778 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9664661:9667014:-1 11/11 None
F58G6.5a ENSEMBL cdna:known chromosome:CEL140:IV:9664342:9667043:-1 gene:F58G6.5 11/11 A 
F58G6.5c ENSEMBL cdna:known chromosome:CEL140:IV:9664347:9672647:-1 gene:F58G6.5 11/11 A 
F58G6.5b ENSEMBL cdna:known chromosome:CEL140:IV:9664661:9675649:-1 gene:F58G6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9664913-9667020(-) 100.0 100.0
Public Domain and Genome References
Ensembl F58G6.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92467 Hypothetical protein F58G6.5a [Caenorhabditis elegans] ref|NP_741480.1| Nuclear Hormone Receptor family member (nhr-34) [Caenorhabditis elegans] 0.0
blast AAG15129 nuclear receptor NHR-34 [Caenorhabditis elegans] 0.0
blast CAE46689 Hypothetical protein F58G6.5c [Caenorhabditis elegans] emb|CAE46673.1| Hypothetical protein F58G6.5c [Caenorhabditis elegans] ref|NP_001023245.1| Nuclear Hormone Receptor family member (nhr-34) [Caenorhabditis elegans] 0.0
blast CAC70146 Hypothetical protein F58G6.5b [Caenorhabditis elegans] emb|CAC70099.2| Hypothetical protein F58G6.5b [Caenorhabditis elegans] ref|NP_501716.2| Nuclear Hormone Receptor family member (nhr-34) [Caenorhabditis elegans] 0.0
blast Q21006 Nuclear hormone receptor family member nhr-34 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.3E-47
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.0E-35
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.3E-47
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.0E-35
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.3E-47
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.0E-35
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.3E-47
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.0E-35
Sequence
Target Sequence 
>C. ELEGANS:193049_AT
gtacatattgcttggtgccgatcgtttgtgctatgcatagactatgcaaaaatcatgaag
gactatcaagaattatcacccactgatcaattcacattgctccgaaatcgagttatttca
gttaattggttgtgccatacttataagacattcaaagctggatgtgatggtgttgctcta
gtaaatggaagatgcaatcactatttccgaattttaagtgaacatttgatggaagattta
gtgattccaatgagggaaatggatatggatgaaggagaatttgtcatactcaaagcatta
attttattcagagctcaccgtcgcctctcagaagaaggtcgtgcacacattaaaagagtt
cgtgacaaatacattgaagctttgtatcaacatgttcaacaccaacatcgtcatttctcg
tctgtacagacatcaatgagaatcagcaaaattttattgttacttcctagcatagagcat
ctctcccaacaagaagatgacaacgttcaatttctggcactttttaatttggcaaatctc
aatggattaccctatgagttacattcctctatcaagcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACATATTGCTTGGTGCCGATCGT 50 461 742 Antisense
GTGCCGATCGTTTGTGCTATGCATA 249 479 756 Antisense
ATCACCCACTGATCAATTCACATTG 204 29 816 Antisense
GCTGGATGTGATGGTGTTGCTCTAG 253 295 898 Antisense
GATGCAATCACTATTTCCGAATTTT 28 413 932 Antisense
AATTTTATTCAGAGCTCACCGTCGC 142 175 1041 Antisense
TCACCGTCGCCTCTCAGAAGAAGGT 652 625 1056 Antisense
ACACCAACATCGTCATTTCTCGTCT 482 109 1140 Antisense
ACTTCCTAGCATAGAGCATCTCTCC 669 103 1203 Antisense
GACAACGTTCAATTTCTGGCACTTT 522 365 1240 Antisense
GAGTTACATTCCTCTATCAAGCAAC 131 399 1297 Antisense
Sequence Source Affymetrix Proprietary Database