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[193045_at] sodium-dependent phosphate transporter

Description ZK563.2 /REP_DB=WormBase Gene ID /WP=CE05093 /TR=Q23530 /GB=AAA81148.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sodium-dependent phosphate transporter
Cluster 6grp_total > 46      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 138.9
(2.5)
P 		94
(-3)
P 		118.9
(0)
P 		143.1
(3)
A 		49
B 134.7
(1.5)
P 		124.1
(0.8)
M 		64.1
(-3)
A 		158.6
(3)
A 		95
C 134.8
(3)
P 		115.6
(1.2)
A 		69.5
(-3)
M 		134.8
(3)
M 		65
avr 136.1
(2.1) 		111.2
(-0.4) 		84.2
(-3) 		145.5
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 117
(3)
M 		72
(0.6)
A 		86.4
(1.4)
A 		4.3
(-3)
A 		79.9
(1)
A 		115.7
(2.9)
A 		113
B 100.3
(0.9)
P 		96.8
(0.3)
P 		75.7
(-3)
A 		90.4
(-0.7)
A 		81.3
(-2.1)
A 		113.7
(3)
A 		38
C 93.6
(2)
P 		89.7
(1.7)
P 		87.3
(1.6)
M 		112.4
(3)
M 		4.6
(-3)
A 		101.2
(2.4)
A 		108
avr 103.6
(2.3) 		86.2
(0.4) 		83.1
(0) 		69
(-1.5) 		55.3
(-3) 		110.2
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 50.6
(3)
P 		20.4
(-3)
P 		31.1
(-0.9)
P 		20.9
(-2.9)
A 		30
B 42.9
(3)
P 		30.7
(0.4)
M 		14.9
(-3)
A 		33.8
(1.1)
A 		28
C 44.6
(3)
P 		33.2
(-0.1)
A 		24.2
(-2.6)
M 		22.7
(-3)
M 		22
avr 46
(3) 		28.1
(-1.8) 		23.4
(-3) 		25.8
(-2.4) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 21.6
(1.5)
M 		25.6
(2.4)
A 		18.8
(0.9)
A 		1.1
(-3)
A 		24.1
(2.1)
A 		28.2
(3)
A 		27
B 34.9
(1.1)
P 		32.2
(0.5)
P 		18.4
(-3)
A 		24
(-1.6)
A 		33
(0.7)
A 		42.4
(3)
A 		24
C 34.7
(3)
P 		27.4
(1.7)
P 		22.2
(0.7)
M 		22.6
(0.8)
M 		1.5
(-3)
A 		33.9
(2.9)
A 		33
avr 30.4
(1.6) 		28.4
(1) 		19.8
(-1.8) 		15.9
(-3) 		19.5
(-1.9) 		34.8
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193045_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18245
Sequence Type Exemplar sequence
Representative Public ID ZK563.2 NCBI
Target Description ZK563.2 /REP_DB=WormBase Gene ID /WP=CE05093 /TR=Q23530 /GB=AAA81148.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sodium-dependent phosphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076180(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076180 NCBI Caenorhabditis elegans ZK563.2 (ZK563.2) mRNA, complete cds. 11/11 None
SNAP00000043682 ENSEMBL cdna:SNAP chromosome:CEL140:X:3371513:3373055:1 11/11 None
ZK563.2 ENSEMBL cdna:known chromosome:CEL140:X:3368947:3373205:1 gene:ZK563.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043695 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3368947-3373056(+) 100.0 100.0
Public Domain and Genome References
Gene Title sodium-dependent phosphate transporter
Ensembl ZK563.2
Entrez Gene 191351 Entrez gene
SwissProt Q23530 EMBL-EBI
WormBase CE31273 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.25143.1.S1_AT similar to solute carrier family 34 (sodium phosphate), member 2 cfa
CANINE_2:CFAAFFX.25145.1.S1_S_AT similar to solute carrier family 34 (sodium phosphate), member 2 cfa
CHICKEN:GGA.216.1.S1_AT solute carrier family 34 (sodium phosphate), member 2 gga
CHICKEN:GGA.216.1.S2_AT solute carrier family 34 (sodium phosphate), member 2 gga
HG-U133_PLUS_2:204124_AT solute carrier family 34 (sodium phosphate), member 2 hs
HG-U133A:204124_AT solute carrier family 34 (sodium phosphate), member 2 hs
HG-FOCUS:204124_AT solute carrier family 34 (sodium phosphate), member 2 hs
HG-U133A_2:204124_AT solute carrier family 34 (sodium phosphate), member 2 hs
U133_X3P:G6910977_3P_X_AT solute carrier family 34 (sodium phosphate), member 2 hs
U133_X3P:G6910977_3P_AT solute carrier family 34 (sodium phosphate), member 2 hs
HG-U95B:48048_AT Solute carrier family 34 (sodium phosphate), member 2 hs
MU11KSUBA:AA414526_S_AT solute carrier family 34 (sodium phosphate), member 2 mm
MG-U74AV2:98994_AT solute carrier family 34 (sodium phosphate), member 2 mm
MOE430A:1416854_AT solute carrier family 34 (sodium phosphate), member 2 mm
MOUSE430A_2:1416854_AT solute carrier family 34 (sodium phosphate), member 2 mm
MOUSE430_2:1416854_AT solute carrier family 34 (sodium phosphate), member 2 mm
RG-U34C:RC_AI234295_AT solute carrier family 34 (sodium phosphate), member 2 rn
RAE230A:1368168_AT solute carrier family 34 (sodium phosphate), member 2 rn
RAT230_2:1368168_AT solute carrier family 34 (sodium phosphate), member 2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6817 phosphate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15321 sodium-dependent phosphate transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81148 Hypothetical protein ZK563.2 [Caenorhabditis elegans] ref|NP_508581.2| ZK563.2 [Caenorhabditis elegans] 0.0
blast AAA81148 Hypothetical protein ZK563.2 [Caenorhabditis elegans] ref|NP_508581.2| ZK563.2 [Caenorhabditis elegans] 1.0E-155
blast CAE68416 Hypothetical protein CBG14195 [Caenorhabditis briggsae] 1.0E-120
blast CAE68416 Hypothetical protein CBG14195 [Caenorhabditis briggsae] 1.0E-119
blast XP_801845 PREDICTED: similar to solute carrier family 34 (sodium phosphate), member 2b isoform 4 [Strongylocentrotus purpuratus] 6.0E-80
blast XP_802004 PREDICTED: similar to solute carrier family 34 (sodium phosphate), member 2b isoform 8 [Strongylocentrotus purpuratus] 1.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR003841 EMBL-EBI Na+/Pi-cotransporter 1.3E-48
Pfam IPR003841 EMBL-EBI Na+/Pi-cotransporter 2.0E-54
Pfam IPR003841 EMBL-EBI Na+/Pi-cotransporter 7.9E-57
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508581.2 8 56-78,109-131,176-195,292-311,373-390,400-422,443-465,469-491
ZK563.2 8 56-78,109-131,176-195,292-311,373-390,400-422,443-465,469-491
SNAP00000043682 5 31-53,74-96,151-173,194-216,220-242
Sequence
Target Sequence 
>C. ELEGANS:193045_AT
agaacagatgtacccacttgtcttgggaagtaacattggaactacgttcagtggtgttct
tgctgctttctcaacagatccgtcaagatttgaaaaagcgttgcatatggcaatgtgcca
agtgatctacaatatcattggaacgtgcttgttctatattgtaccatgtacaaggaagtt
tccagtatatttatcagtaaaactgggggtaattacggaccattaccgctggttcattgt
tgtcttcatctccacagttttcctgattattcccttcactataatcgggctcacgctttt
accagacaacgttattgtcattgtcttcataatcattcttatcatcgccattacctgttg
ctttatttgtgtattacagaatagttgcaaagagtttctcccgaaaattctacacaactg
gagttttttgccaatttggatgagatcattgcaatattacgatcctttcatgtgcaaagt
gttcactaatattccttatattggaggatttttccggaaaggaggagcccatcgtgaacg
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACAGATGTACCCACTTGTCTTG 541 71 903 Antisense
ACGTTCAGTGGTGTTCTTGCTGCTT 220 89 946 Antisense
TGCTGCTTTCTCAACAGATCCGTCA 46 583 963 Antisense
ACGTGCTTGTTCTATATTGTACCAT 537 95 1045 Antisense
ATTACGGACCATTACCGCTGGTTCA 433 13 1114 Antisense
TGGTTCATTGTTGTCTTCATCTCCA 579 551 1132 Antisense
TTCATCTCCACAGTTTTCCTGATTA 287 689 1147 Antisense
CCTTCACTATAATCGGGCTCACGCT 159 269 1175 Antisense
GCTCACGCTTTTACCAGACAACGTT 434 301 1191 Antisense
TTATCATCGCCATTACCTGTTGCTT 52 681 1241 Antisense
GAAAGGAGGAGCCCATCGTGAACGC 288 361 1419 Antisense
Sequence Source Affymetrix Proprietary Database