[Home] | [Total List]

[193044_s_at]

Description H19N07.2A /REP_DB=WormBase Gene ID /WP=CE16182 /TR=O45623 /GB=CAB07396.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ubiquitin carboxyl-terminal hydrolase
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 85      6grp_total > 39      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 706
1 2 3 4 range
A 1101.9
(3)
P 		553.6
(-2.5)
P 		765.9
(-0.4)
P 		501
(-3)
P 		601
B 1206.5
(3)
P 		658.4
(-3)
P 		754.8
(-1.9)
P 		663.4
(-2.9)
P 		548
C 1133
(3)
P 		726.8
(-1.7)
P 		780.6
(-1.1)
P 		618.2
(-3)
P 		515
avr 1147.1
(3) 		646.3
(-2.4) 		767.1
(-1.1) 		594.2
(-3) 		553

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 874
1 2 3 4 5 6 range
A 758.1
(0.6)
P 		1003.3
(3)
P 		378.8
(-3)
P 		781.3
(0.9)
P 		697.3
(0.1)
P 		958.4
(2.6)
P 		625
B 673.3
(1.8)
P 		662.4
(1.5)
P 		475.8
(-3)
P 		615.1
(0.4)
P 		682.2
(2)
P 		722.4
(3)
P 		247
C 1252.3
(3)
P 		709.5
(-2.8)
P 		890.3
(-0.9)
P 		691.6
(-3)
P 		905.8
(-0.7)
P 		742.3
(-2.5)
P 		561
avr 894.6
(3) 		791.7
(1) 		581.6
(-3) 		696
(-0.8) 		761.8
(0.5) 		807.7
(1.3) 		313
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 401.2
(3)
P 		120.2
(-2.1)
P 		200.2
(-0.7)
P 		73.3
(-3)
P 		328
B 384.7
(3)
P 		162.6
(-2.5)
P 		174.9
(-2.2)
P 		141.4
(-3)
P 		243
C 375.1
(3)
P 		209
(-0.7)
P 		272.1
(0.7)
P 		104.2
(-3)
P 		271
avr 387
(3) 		163.9
(-1.8) 		215.7
(-0.7) 		106.3
(-3) 		281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 139.7
(-1.7)
P 		356.8
(3)
P 		82.5
(-3)
P 		198.2
(-0.5)
P 		210.4
(-0.2)
P 		233.3
(0.3)
P 		274
B 234.3
(1.4)
P 		220.5
(0.9)
P 		115.5
(-3)
P 		162.9
(-1.2)
P 		277.1
(3)
P 		269.4
(2.7)
P 		162
C 464.2
(3)
P 		216.5
(-1.6)
P 		226.6
(-1.4)
P 		139.1
(-3)
P 		293.1
(-0.2)
P 		248.5
(-1)
P 		325
avr 279.4
(3) 		264.6
(2.4) 		141.5
(-3) 		166.7
(-1.9) 		260.2
(2.2) 		250.4
(1.7) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193044_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14611
Sequence Type Exemplar sequence
Representative Public ID H19N07.2A NCBI
Target Description H19N07.2A /REP_DB=WormBase Gene ID /WP=CE16182 /TR=O45623 /GB=CAB07396.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ubiquitin carboxyl-terminal hydrolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073425(11), NM_001028841(11), NM_073424(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073425 NCBI Caenorhabditis elegans H19N07.2b (H19N07.2) mRNA, complete cds. 11/11 None
NM_001028841 NCBI Caenorhabditis elegans H19N07.2c (H19N07.2) mRNA, complete cds. 11/11 None
NM_073424 NCBI Caenorhabditis elegans H19N07.2a (H19N07.2) mRNA, complete cds. 11/11 None
SNAP00000011316 ENSEMBL cdna:SNAP chromosome:CEL140:V:11116632:11120741:1 11/11 None
GENEFINDER00000011321 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11116632:11120741:1 11/11 None
H19N07.2b ENSEMBL cdna:known chromosome:CEL140:V:11116502:11121397:1 gene:H19N07.2 11/11 None
H19N07.2c ENSEMBL cdna:known chromosome:CEL140:V:11116632:11121339:1 gene:H19N07.2 11/11 None
H19N07.2a ENSEMBL cdna:known chromosome:CEL140:V:11116632:11120741:1 gene:H19N07.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11116631-11120741(+) 100.0 100.0
Public Domain and Genome References
Ensembl H19N07.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07397 Hypothetical protein H19N07.2b [Caenorhabditis elegans] ref|NP_505826.1| H19N07.2b [Caenorhabditis elegans] 0.0
blast CAB07396 Hypothetical protein H19N07.2a [Caenorhabditis elegans] ref|NP_505825.1| H19N07.2a [Caenorhabditis elegans] 0.0
blast CAE54910 Hypothetical protein H19N07.2c [Caenorhabditis elegans] ref|NP_001024012.1| H19N07.2c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.1E-19
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193044_S_AT
agaagagctaacactgttcccattgaaagaaggaactgtcattgatattattaacgaggc
aaaacgatactatccattcgtagaaggaggatcaggaaaattcaggcttctacaaattgg
ggctcccccactcagtaatcaacgtgtttatcaaatttacggagaaaacaccttgattag
tgatcttgatcaacgaacaatgtacaaattggtgagttcacaggctctacattgccgcct
tgaggaggttccgattgacgaattagatatgtcacctggcgagtttctatgcccagtcgt
ccattttgatcgagaacccacaaaacttttcggactctcatttgttatcaaaatacgtaa
caatgagctgatgacagaagtacgggatcgtcttcgtaggaaattgaacgatgtctccga
tgctgactttgccaaatacaagtttgcattgcttagcagagataaactctgtcgtaccat
cgaattcaacaacggcgagaaagtcaacctggcagatatggcaaatcaaacaactggagt
tccacaagtgtacattggtctagatcacaaatcacccatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGAGCTAACACTGTTCCCATTG 245 75 2796 Antisense
CAGGCTTCTACAAATTGGGGCTCCC 291 207 2898 Antisense
CTCCCCCACTCAGTAATCAACGTGT 19 235 2918 Antisense
TACATTGCCGCCTTGAGGAGGTTCC 685 643 3023 Antisense
ATATGTCACCTGGCGAGTTTCTATG 430 21 3062 Antisense
TGCCCAGTCGTCCATTTTGATCGAG 394 585 3085 Antisense
ACTTTTCGGACTCTCATTTGTTATC 331 101 3120 Antisense
GAAGTACGGGATCGTCTTCGTAGGA 86 333 3172 Antisense
GAACGATGTCTCCGATGCTGACTTT 59 347 3201 Antisense
ACGGCGAGAAAGTCAACCTGGCAGA 159 95 3287 Antisense
GGTCTAGATCACAAATCACCCATCC 424 503 3352 Antisense
Sequence Source Affymetrix Proprietary Database