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[193042_s_at]

Description T05A6.2 /REP_DB=WormBase Gene ID /WP=CE18928 /TR=Q22198 /GB=CAA90670.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=posterior sex combs protein-like domain
Cluster 6grp_high1_10_10 > 89      4grp_high_8_8 > 20      6grp_total > 99      4grp_total > 20      6grp_cgc > 79      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 129.1
(0.5)
P 		103.3
(-1.7)
P 		88.9
(-3)
P 		157
(3)
M 		68
B 146.1
(0.6)
P 		125.9
(-0.3)
P 		66
(-3)
P 		199.5
(3)
P 		134
C 160.7
(-0.7)
P 		168.6
(-0.4)
P 		98.4
(-3)
P 		258.4
(3)
P 		160
avr 145.3
(0) 		132.6
(-0.6) 		84.4
(-3) 		205
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 62.6
(-3)
A 		197.6
(-1)
P 		167.8
(-1.4)
P 		160.3
(-1.5)
P 		465.9
(3)
P 		323.6
(0.9)
P 		403
B 197.2
(0.1)
P 		176.5
(-0.6)
P 		107.3
(-3)
P 		267.9
(2.6)
P 		223.2
(1)
P 		280.9
(3)
P 		174
C 266.8
(1.8)
P 		156.3
(-1.9)
P 		289.4
(2.6)
P 		122
(-3)
P 		290.8
(2.6)
P 		302.7
(3)
P 		181
avr 175.5
(-3) 		176.8
(-2.9) 		188.2
(-2.5) 		183.4
(-2.7) 		326.6
(3) 		302.4
(2) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 47
(3)
P 		22.4
(-3)
P 		23.2
(-2.8)
P 		23
(-2.9)
M 		25
B 46.6
(3)
P 		31.1
(0)
P 		15.3
(-3)
P 		42.5
(2.2)
P 		31
C 53.2
(3)
P 		48.5
(1.5)
P 		34.3
(-3)
P 		43.6
(-0)
P 		19
avr 48.9
(3) 		34
(-0.6) 		24.3
(-3) 		36.4
(-0) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 11.5
(-3)
A 		70.3
(-0.3)
P 		36.5
(-1.8)
P 		40.6
(-1.6)
P 		140.6
(3)
P 		78.8
(0.1)
P 		129
B 68.6
(0.2)
P 		58.7
(-0.5)
P 		26.1
(-3)
P 		71
(0.4)
P 		90.7
(1.9)
P 		104.7
(3)
P 		79
C 98.9
(2.8)
P 		47.7
(-1.2)
P 		73.7
(0.8)
P 		24.5
(-3)
P 		94.1
(2.4)
P 		101.3
(3)
P 		77
avr 59.7
(-1.6) 		58.9
(-1.7) 		45.4
(-3) 		45.4
(-3) 		108.5
(3) 		94.9
(1.7) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193042_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4807
Sequence Type Exemplar sequence
Representative Public ID T05A6.2 NCBI
Target Description T05A6.2 /REP_DB=WormBase Gene ID /WP=CE18928 /TR=Q22198 /GB=CAA90670.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=posterior sex combs protein-like domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027138(11), NM_063241(11), AF179359(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027138 NCBI Caenorhabditis elegans CKI family (Cyclin-dependent Kinase Inhibitor) family member (cki-2) (cki-2) mRNA, complete cds. 11/11 None
NM_063241 NCBI Caenorhabditis elegans CKI family (Cyclin-dependent Kinase Inhibitor) family member (cki-2) (cki-2) mRNA, complete cds. 11/11 A 
AF179359 NCBI Caenorhabditis elegans cyclin-dependent kinase inhibitor (cki-2) mRNA, complete cds. 11/11 None
GENEFINDER00000031187 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7816630:7818184:1 11/11 None
T05A6.2b ENSEMBL cdna:known chromosome:CEL140:II:7816614:7820108:1 gene:T05A6.2 11/11 A 
T05A6.2a ENSEMBL cdna:known chromosome:CEL140:II:7816630:7818184:1 gene:T05A6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031182 6/11 Cross Hyb Matching Probes None
SNAP00000031183 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7816626-7818181(+) 100.0 100.0
Public Domain and Genome References
Ensembl T05A6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD45597 Hypothetical protein T05A6.2b [Caenorhabditis elegans] ref|NP_001022309.1| CKI family (Cyclin-dependent Kinase Inhibitor) family member (cki-2) [Caenorhabditis elegans] gb|AAF13869.1| cyclin-dependent kinase inhibitor [Caenorhabditis elegans] 1.0E-128
blast CAA90670 Hypothetical protein T05A6.2a [Caenorhabditis elegans] ref|NP_495642.3| CKI family (Cyclin-dependent Kinase Inhibitor) family member (cki-2) [Caenorhabditis elegans] 1.0E-127
blast CAA90670 Hypothetical protein T05A6.2a [Caenorhabditis elegans] ref|NP_495642.3| CKI family (Cyclin-dependent Kinase Inhibitor) family member (cki-2) [Caenorhabditis elegans] 1.0E-126
blast CAD45597 Hypothetical protein T05A6.2b [Caenorhabditis elegans] ref|NP_001022309.1| CKI family (Cyclin-dependent Kinase Inhibitor) family member (cki-2) [Caenorhabditis elegans] gb|AAF13869.1| cyclin-dependent kinase inhibitor [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR003175 EMBL-EBI Cyclin-dependent kinase inhibitor 5.1E-15
Pfam IPR003175 EMBL-EBI Cyclin-dependent kinase inhibitor 1.5E-15
Sequence
Target Sequence 
>C. ELEGANS:193042_S_AT
tcgagtcgatttctgcttccgaagttccaagcttttaccgagagaagattgttcggccgc
gaaaaatcattgccagacggaattcaacaccggtttctgacactgttgagatgccttcag
aatctcctcctgtcgtggaatcgaacgagactccacttttgattgcttctacgtctactg
aagtaaccgtatacgagaagcctgtgaccagatcgtctgctgctaaacaatcaatcgaac
aacaggagacgtacaacttgaagcagacaaaattgacaaattacatgccagttcgaaagc
gccgtagtgagacgtgcctggtcaccgctgccgtttcgatgagtcgttcagtttcaatcg
actcgagcatggaatcttgcaaggaaaaacgtggaagtaagattgtccacaacaacaagg
gagctccgaaacggccacttagatttgttgcatcaaatgtgccaaagtccgcacagtcgt
ctacctcggatactgttctagttagttcgcctcgttcgccaccagccaagaagatgacta
cctcgactcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAGTCGATTTCTGCTTCCGAAGT 703 601 203 Antisense
TCCGAAGTTCCAAGCTTTTACCGAG 19 595 220 Antisense
ATTCAACACCGGTTTCTGACACTGT 412 11 284 Antisense
TCTCCTCCTGTCGTGGAATCGAACG 10 607 325 Antisense
GAACGAGACTCCACTTTTGATTGCT 554 347 345 Antisense
TTTTGATTGCTTCTACGTCTACTGA 370 677 359 Antisense
TTACATGCCAGTTCGAAAGCGCCGT 278 681 483 Antisense
AAAGCGCCGTAGTGAGACGTGCCTG 147 125 498 Antisense
ACAAGGGAGCTCCGAAACGGCCACT 486 105 617 Antisense
CGTCTACCTCGGATACTGTTCTAGT 344 245 680 Antisense
CAAGAAGATGACTACCTCGACTCGT 649 185 729 Antisense
Sequence Source Affymetrix Proprietary Database