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[193041_at] helix-loop-helix DNA-binding proteinn

Description F57C12.3 /REP_DB=WormBase Gene ID /WP=CE04673 /TR=Q20941 /GB=AAA83297.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=helix-loop-helix DNA-binding proteinn
Cluster 6grp_total > 63      4grp_total > 16      6grp_cgc > 93      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 6.3
(-3)
A 		32
(3)
A 		11.7
(-1.7)
A 		17.9
(-0.3)
A 		26
B 5.9
(-3)
A 		10.9
(-1.9)
A 		33.8
(3)
A 		28.8
(1.9)
P 		28
C 20.5
(-0.3)
A 		3.4
(-3)
A 		9.4
(-2)
A 		40.9
(3)
A 		38
avr 10.9
(-3) 		15.4
(-1.5) 		18.3
(-0.6) 		29.2
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 2.9
(-3)
A 		15.5
(-0.8)
A 		29
(1.5)
A 		37.4
(3)
P 		19.3
(-0.1)
A 		21.3
(0.2)
A 		35
B 10.4
(-0.8)
A 		22.8
(2.4)
A 		25.3
(3)
A 		23.3
(2.5)
A 		6.9
(-1.7)
A 		1.8
(-3)
A 		24
C 16.2
(-0.5)
A 		5.2
(-2.5)
A 		35.6
(3)
A 		22.7
(0.7)
A 		2.2
(-3)
A 		23.4
(0.8)
A 		33
avr 9.8
(-2.9) 		14.5
(-1.5) 		30
(3) 		27.8
(2.4) 		9.5
(-3) 		15.5
(-1.2) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.3
(-3)
A 		6.9
(3)
A 		3.1
(-2)
A 		2.6
(-2.6)
A 		5
B 1.9
(-3)
A 		2.7
(-2.2)
A 		7.8
(3)
A 		6.1
(1.3)
P 		6
C 6.8
(2.9)
A 		1
(-3)
A 		3.3
(-0.7)
A 		6.9
(3)
A 		6
avr 3.7
(-2.3) 		3.5
(-3) 		4.7
(1.2) 		5.2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.5
(-3)
A 		5.5
(0.3)
A 		6.3
(0.9)
A 		9.5
(3)
P 		5.8
(0.5)
A 		5.2
(0.1)
A 		9
B 3.6
(-0.5)
A 		7.6
(3)
A 		6.2
(1.8)
A 		6.2
(1.8)
A 		2.8
(-1.2)
A 		0.7
(-3)
A 		7
C 6
(0.8)
A 		1.6
(-2.4)
A 		9.1
(3)
A 		4.6
(-0.2)
A 		0.7
(-3)
A 		7.8
(2.1)
A 		8
avr 3.4
(-2.6) 		4.9
(-0.4) 		7.2
(3) 		6.8
(2.4) 		3.1
(-3) 		4.6
(-0.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193041_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18157
Sequence Type Exemplar sequence
Representative Public ID F57C12.3 NCBI
Target Description F57C12.3 /REP_DB=WormBase Gene ID /WP=CE04673 /TR=Q20941 /GB=AAA83297.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=helix-loop-helix DNA-binding proteinn
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075718(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075718 NCBI Caenorhabditis elegans Helix Loop Helix family member (hlh-19) (hlh-19) mRNA, complete cds. 11/11 None
GENEFINDER00000008055 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:555910:556250:-1 11/11 None
F57C12.3 ENSEMBL cdna:known chromosome:CEL140:X:555910:556250:-1 gene:F57C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:555909-556250(-) 100.0 100.0
Public Domain and Genome References
Gene Title helix-loop-helix DNA-binding proteinn
Gene Symbol hlh-19
Ensembl F57C12.3
Entrez Gene 186449 Entrez gene
SwissProt Q20941 EMBL-EBI
WormBase CE04673 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83297 Helix loop helix protein 19 [Caenorhabditis elegans] ref|NP_508119.1| Helix Loop Helix family member (hlh-19) [Caenorhabditis elegans] 3.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 2.8E-7
Sequence
Target Sequence 
>C. ELEGANS:193041_AT
ttgcgcaaccatcttccgaagcaattacgagatcgaaaaccgtcgaaagcggagacctta
aagtcagctgcgcaatatatatctcatctattgaggattttggagaaagaaatagaaaac
tcttcgaataatttaaaagatgaacatcaaaaagaccctagtttgaccacgccttcacat
ctgaattcgaaaattgaagtatgctatgcacaccaaaatggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCGCAACCATCTTCCGAAGCAAT 80 703 16 Antisense
TCTTCCGAAGCAATTACGAGATCGA 437 617 27 Antisense
GAGATCGAAAACCGTCGAAAGCGGA 640 391 44 Antisense
AGCGGAGACCTTAAAGTCAGCTGCG 150 81 63 Antisense
GACCTTAAAGTCAGCTGCGCAATAT 132 383 69 Antisense
AGCTGCGCAATATATATCTCATCTA 464 81 81 Antisense
ATATCTCATCTATTGAGGATTTTGG 224 21 94 Antisense
TCAAAAAGACCCTAGTTTGACCACG 536 627 162 Antisense
CCACGCCTTCACATCTGAATTCGAA 60 275 182 Antisense
GAAAATTGAAGTATGCTATGCACAC 533 353 204 Antisense
GTATGCTATGCACACCAAAATGGAG 607 423 214 Antisense
Sequence Source Affymetrix Proprietary Database